Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02149 ATGGGGTTGGAGACTCTTGCCCCTGTAGTTGACAAGGTCAACACGTCACAAGAGACATCAAGAAAGAGGTCTTGTCCCGGTAAAAAGAACCAAGGGAAAGTCCCTAACAGAGTTCACAAGGCTGAAAGAAAGAAAATGAAGCGTGAACATTTGAATGAACTCTTTCTTGGTCTTGCCAATGCACTTGACCTTAATGAACAGAGCAATGGAAAAGCTTCTATATTGAGGGAAGCCACCAGATTGCTTAAAGACTTGCTCAGTCAGATTGAGTCCTTGAAAAAGGACAGTGCATCTTTGTTGTCTGAAACACATTATGTGACTATGGTGAAAACTGAGATGGTGGAGGAGAATTCTGCTCTAAAAACTCAAATTGAGAAGCTTCAAGGTGAGATAAAAGCAAGAGTAGCCCAATCTAGACCTGACCTGAATGTTCCTCCTCATTTGGAACTTCAGCAACAAGAAAAGGCAACAAAGTTTTCAGGAGAGAGTCTCCAATTGTCTACCATAGAACCTACATTGCAGCAAGGACATGCAGTTTTGGTTGTCCCCTTAAGTCATCATCACCAAGATGCTTTATCAGCTCATAATGTTGCTGAGGTGACCCCAAAACCCACCTCCACTATCAGTAAACCACATGCCAGGTATCCTACTCCAATGGATTCATGGCCATTGCAGCTGCTTGCAGAGCAACCAACTTCAAGTTAA 705 0.4298 MGLETLAPVVDKVNTSQETSRKRSCPGKKNQGKVPNRVHKAERKKMKREHLNELFLGLANALDLNEQSNGKASILREATRLLKDLLSQIESLKKDSASLLSETHYVTMVKTEMVEENSALKTQIEKLQGEIKARVAQSRPDLNVPPHLELQQQEKATKFSGESLQLSTIEPTLQQGHAVLVVPLSHHHQDALSAHNVAEVTPKPTSTISKPHARYPTPMDSWPLQLLAEQPTSS 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02149 234 MobiDBLite consensus disorder prediction 195 234 - -
Pumo10g02149 234 Gene3D - 35 111 IPR036638 GO:0046983
Pumo10g02149 234 PANTHER TRANSCRIPTION FACTOR BHLH47 2 233 - -
Pumo10g02149 234 MobiDBLite consensus disorder prediction 1 45 - -
Pumo10g02149 234 Coils Coil 110 130 - -
Pumo10g02149 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 35 85 IPR011598 GO:0046983
Pumo10g02149 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 35 99 IPR036638 GO:0046983
Pumo10g02149 234 Coils Coil 75 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02149 Pumo-Chr10 29088938 29091030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02149 31 230 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47640 46.119 8.10e-52 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02149 - - mtr:11438092 293.123