Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02146 ATGGTCCACGTCTCCTTTTACAGGAACTGTAAGCACACACAGATCGATCCAACAACACTCTCTTACGACGGCGTTTCCATTGATCTGTTTCTGTTTTTGTTATTCACAGATGGGAAGACATTTAAGAAGCCGCGACGTCCGTACGAGAAGGAGCGGCTGGACGCGGAGCTGAAGCTGGTGGGGGAGTACGGGCTGCGGTGCAAGAGGGAGCTGTGGAGGGTGCAGTACGCCCTCAGCCGCATCCGCAACAACGCCAGGAACCTCCTCACCCTCGACGAGAAGAACCCTCGCCGGATCTTCGAGGGCGAGGCTCTGCTCCGCAGGATGTTCCGCCACGGCCTCCTCGACGAGACCCAGAACAAGCTCGATTACGTCCTCGCCCTCACCGTCGAGAACTTCCTCGAGCGCCGCCTCCAGACACTCGTCTTCAAGTCCGGGATGGCCAAGTCCATTCACCATGCTAGGGTTCTCATCAAGCAGAGACATATCAGGGTTGGTAGGCAAGTGGTGAACATCCCATCTTTCTTGGTGAGGGTTGACTCACAGAAGCACATTGACTTCTCACTCACAAGTCCTCTTGGTGGTGGACGCCCTGGAAGAGTGAAGAGAAAGAACCAAAGGGCTGCTGCTAAGAAGGCAGCTGGTGGAGATGGAGATGAGGAAGATGAGGATTAG 675 0.5541 MVHVSFYRNCKHTQIDPTTLSYDGVSIDLFLFLLFTDGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARNLLTLDEKNPRRIFEGEALLRRMFRHGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIKQRHIRVGRQVVNIPSFLVRVDSQKHIDFSLTSPLGGGRPGRVKRKNQRAAAKKAAGGDGDEEDED 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02146 224 SMART Ribosomal_S4_2 32 135 IPR001912 GO:0019843
Pumo10g02146 224 NCBIfam 30S ribosomal protein S4 39 193 IPR005710 GO:0003735|GO:0006412|GO:0015935
Pumo10g02146 224 CDD S4 136 180 - -
Pumo10g02146 224 ProSitePatterns Ribosomal protein S4 signature. 134 158 IPR018079 GO:0019843
Pumo10g02146 224 ProSiteProfiles S4 RNA-binding domain profile. 136 210 - -
Pumo10g02146 224 Pfam S4 domain 136 179 IPR002942 GO:0003723
Pumo10g02146 224 SUPERFAMILY Alpha-L RNA-binding motif 39 185 - -
Pumo10g02146 224 MobiDBLite consensus disorder prediction 190 224 - -
Pumo10g02146 224 SMART s4_6 136 207 IPR002942 GO:0003723
Pumo10g02146 224 Gene3D - 135 192 IPR036986 GO:0003723
Pumo10g02146 224 FunFam 40S ribosomal protein S9 135 215 - -
Pumo10g02146 224 PANTHER 30S 40S RIBOSOMAL PROTEIN 39 210 IPR022801 GO:0003735|GO:0015935|GO:0019843
Pumo10g02146 224 Pfam Ribosomal protein S4/S9 N-terminal domain 38 135 IPR001912 GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02146 Pumo-Chr10 29063602 29065581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02146 38 214 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 90.960 3.49e-118 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02146 K02997 - gmx:100810569 340.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01304 4 16610493 16612039 Pumo10g02146 10 29063602 29065581 ECH
Pumo10g02146 10 29063602 29065581 Pumo10g02146 10 29063602 29065581 ECH