Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02138 ATGGCGGTGACAGACAACAGTGTCAGTGGTGATGGTTGTAATAGTGGAGGTGGTGGTAGTGGTGATGACAATGATGGTGGTACTGATAACAACAATGGTGAATGGAGGTCACGGTCAAGGCAAACAAGTAGTTCAAGGAATATCACCGATGATCAGATCAATGATCTTGTCTCCAAGTTGCAACAGCTTCTTCCAGAGATTCGCGATAGGCGCTCTGACAAGGTTTCAGCTTCCAAGGTGTTGCAAGAGACATGCAACTACATTAGAAGCTTACACAGGGAAGTGGATGACCTAAGCGAACGCTTATCTGAGCTCTTGGCTACAACTGACACGGCACAAGCTGCAATAATTAGAAATTTACTAATGCAATAG 372 0.4489 MAVTDNSVSGDGCNSGGGGSGDDNDGGTDNNNGEWRSRSRQTSSSRNITDDQINDLVSKLQQLLPEIRDRRSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATTDTAQAAIIRNLLMQ 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02138 123 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 37 91 IPR011598 GO:0046983
Pumo10g02138 123 MobiDBLite consensus disorder prediction 24 51 - -
Pumo10g02138 123 FunFam Transcription factor ILI6 38 118 - -
Pumo10g02138 123 Pfam Helix-loop-helix DNA-binding domain 51 92 IPR011598 GO:0046983
Pumo10g02138 123 Coils Coil 88 108 - -
Pumo10g02138 123 CDD bHLH_AtPRE_like 48 108 - -
Pumo10g02138 123 Gene3D - 49 119 IPR036638 GO:0046983
Pumo10g02138 123 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 51 109 IPR036638 GO:0046983
Pumo10g02138 123 PANTHER TRANSCRIPTION FACTOR PRE 35 122 IPR044293 GO:0006355|GO:0040008|GO:0046983
Pumo10g02138 123 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02138 Pumo-Chr10 28848573 28852708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02138 48 123 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G74500 80.519 5.80e-39 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo10g02138 HLH 1.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02138 - - gmx:100527636 162.54