Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02123 ATGGCGGGTGGGAGTGTCTTCTGCGCTGCTGCTGCTGCTTCTTCTAATTTAACAACCACTTTGCTTCCCAACCAAACACCTCCTTCCACCACCTCTCAGCCTCCTCTCGATTCTCTTTTCCTCTCTGCCTCTTCCCCTTTCCTCGGTTCAAGATCTATAGTTAGTTTTGGAGATGTTCAAGGAGGGAAGGGGTGCAATGACTCGTTCTTCCGCCCCTATGATGAGAATGGGGATGAGGACATGGACGAGTACTTTCACCAGCCTGAGAAGAAGCGCAGGCTCTTAGTTGAGCAAGTGCAGTTTCTTGAGAAGAGCTTTGATGAGGAGAACAAGCTCGAACCCGAGAGGAAGGTTCGGCTAGCCAAGGAACTCGGCTTGCAGCCAAGGCAGGTGGCGATTTGGTTCCAGAACCGCCGCGCACGGTGGAAGACCAAGCAGATGGAGAAGGACTATGATTCCCTGCAGGCTAGCTACAATGATCTCAAGGCCAACTATGACAACCTTCTCAGGGAAAAGGATAAACTCAAAGCTGAGGTGGCAAGGCTCACTGAGAAGGTGCTTGGAAGAGAGAAAAACGAGGGAAACTTGGAGCAGGCTGAAACCAATGGATTGCAGGAGCCGCTGCAGAAGTCTTTGGTTGATTCAGCTTCTGAGGGTGAAGGGTCCAAAGTGTCCATTGGGGCTTGTAAACAGGAAGACATTAGTTCAGCCAAGAGTGACATATTTGATTCATCAGAAAGTCCACATTACACTGATGGAGTTCACTCTGCACTCCTTGAGACTGGTGACTCTTCTTATGCGTTTGAACCTGATCAATCTGATGTGTCTCAGGATGAAGAAGATAACTTGAGCAAGACCCTTTTGCCCCATTACATCTTTCCCAAACTTGAAGATGTTGATTACTCCGACCCACCTCATGGTTCATGTAATTTTGGAATTCCTGAGGAAGATCAAGCCATTTGGTCTTGGCCTTACTGA 978 0.4857 MAGGSVFCAAAAASSNLTTTLLPNQTPPSTTSQPPLDSLFLSASSPFLGSRSIVSFGDVQGGKGCNDSFFRPYDENGDEDMDEYFHQPEKKRRLLVEQVQFLEKSFDEENKLEPERKVRLAKELGLQPRQVAIWFQNRRARWKTKQMEKDYDSLQASYNDLKANYDNLLREKDKLKAEVARLTEKVLGREKNEGNLEQAETNGLQEPLQKSLVDSASEGEGSKVSIGACKQEDISSAKSDIFDSSESPHYTDGVHSALLETGDSSYAFEPDQSDVSQDEEDNLSKTLLPHYIFPKLEDVDYSDPPHGSCNFGIPEEDQAIWSWPY 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02123 325 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 77 239 IPR045224 GO:0003700
Pumo10g02123 325 Gene3D - 95 139 - -
Pumo10g02123 325 ProSitePatterns 'Homeobox' domain signature. 120 143 IPR017970 GO:0000981|GO:0006355
Pumo10g02123 325 SMART HOX_1 88 149 IPR001356 GO:0003677
Pumo10g02123 325 FunFam homeobox-leucine zipper protein ATHB-6-like 93 139 - -
Pumo10g02123 325 Pfam Homeodomain 91 143 IPR001356 GO:0003677
Pumo10g02123 325 PRINTS Lambda-repressor HTH signature 125 141 IPR000047 GO:0003677
Pumo10g02123 325 PRINTS Lambda-repressor HTH signature 116 125 IPR000047 GO:0003677
Pumo10g02123 325 SUPERFAMILY Homeodomain-like 79 147 IPR009057 -
Pumo10g02123 325 CDD homeodomain 90 146 IPR001356 GO:0003677
Pumo10g02123 325 Gene3D - 140 188 - -
Pumo10g02123 325 Coils Coil 144 192 - -
Pumo10g02123 325 Pfam Homeobox associated leucine zipper 145 186 IPR003106 GO:0006355|GO:0043565
Pumo10g02123 325 ProSiteProfiles 'Homeobox' domain profile. 85 145 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02123 Pumo-Chr10 28678047 28680519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02123 88 244 Homeobox Transcription Factor Family AT3G01470 52.201 5.61e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo10g02123 Homeodomain 8.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02123 - - gmx:732618 583.948