Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02105 ATGGTGAGATCTCCTTCTTGTGAAAAAATCAATGTCAAAAGGGGTGTGTGGACTACAGAAGAAGATACAAAGAAGCTTGCATTTGGCTCCAAGCATGGATCTGGTAACTGGACTTCTGTCCCCAAAAAATCAAGGCTCAAGAGGTGTGGAAAGAGTTGTAGGCTTAGGTGGACTAACTACCCCAGGCCTGATCTTAAGCACGACAATTTCACAACCCAAGAAGAAGATCTAATCATTAAGCTTCATGCAGCCATAGGTAGCAGGTGGTCTATAATAGCCCAACAACTTCCTGGGAGAACAGACAATGATGTAAAGAACTATTGGAACACAAAGCTGAAAAAGAAGCTCTCTCAAATGGGAATTGACCCTGTTACCCACAAGCCCTTTTCTAAACTCATTGCTGACTATGGACACATTGGGGGTTGCCAGAAACCAAGTACTCGAATTGGGTCAATCAATAAAGACTTCAAGAATGCAATGATGTTAAAATCAGAGCCCCATCAAACCCAACCACAAGGATTTACAAACATCAATGACCAACCAAAGCCACCACCCAAAATGGAAACAACTGGAAATAGCTTTTTGTTTAATAGAGCTCGTGATGATAACCTCTCAATGAATCTTGATCAGTTCCCAGCCATACCAATAATGTCAGGTGCCTTAAATTACGTAGACTTTGAGAATGAGACCATCCCAGCATCCATGTTTGGTGAAGACTGCTTGTCAAAAACTTCATCACCATCTACTCCTTCTACTTGTTCCACTTCAGCTTTTAGTTGGAATGACTTCCTTCTAGAAGATGTTGTTACACCGCTTGATAACCAAGAACTAGACATCATGGTTTCGAAGGACTTGGTGAGCCAAATAGAGAATGTGTCCAAACAAAGTTGGAACAGGAAAGAGGTTAAGTCACAACAAGCCTCAAGTAGTGACTTCCAATTTTCATCATCCTCTGACATTTCATTCATAGAAGCCATGCTTGATCAAGAAAATGAGATGTTCCTAAGTTTTCCTCATCTTATGGAGGAACCATCCAATTTGAATTAA 1047 0.4088 MVRSPSCEKINVKRGVWTTEEDTKKLAFGSKHGSGNWTSVPKKSRLKRCGKSCRLRWTNYPRPDLKHDNFTTQEEDLIIKLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKLKKKLSQMGIDPVTHKPFSKLIADYGHIGGCQKPSTRIGSINKDFKNAMMLKSEPHQTQPQGFTNINDQPKPPPKMETTGNSFLFNRARDDNLSMNLDQFPAIPIMSGALNYVDFENETIPASMFGEDCLSKTSSPSTPSTCSTSAFSWNDFLLEDVVTPLDNQELDIMVSKDLVSQIENVSKQSWNRKEVKSQQASSSDFQFSSSSDISFIEAMLDQENEMFLSFPHLMEEPSNLN 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02105 348 CDD SANT 17 60 IPR001005 -
Pumo10g02105 348 FunFam Os07g0634900 protein 69 128 - -
Pumo10g02105 348 CDD SANT 69 112 IPR001005 -
Pumo10g02105 348 MobiDBLite consensus disorder prediction 166 185 - -
Pumo10g02105 348 FunFam MYB-related transcription factor 13 66 - -
Pumo10g02105 348 PANTHER F14D16.11-RELATED 1 345 - -
Pumo10g02105 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pumo10g02105 348 SMART sant 66 114 IPR001005 -
Pumo10g02105 348 SMART sant 13 63 IPR001005 -
Pumo10g02105 348 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pumo10g02105 348 Gene3D - 7 67 - -
Pumo10g02105 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 60 IPR017930 -
Pumo10g02105 348 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo10g02105 348 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo10g02105 348 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
Pumo10g02105 348 Pfam Myb-like DNA-binding domain 14 60 IPR001005 -
Pumo10g02105 348 Gene3D - 68 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02105 Pumo-Chr10 28393608 28395265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02105 1 343 MYB Transcription Factor Family AT3G28470 39.831 2.41e-66 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo10g02105 Myb_DNA-binding 3.3e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02105 K09422 - gmx:100795381 563.918