Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02103 ATGGATCCTCCTCTCATCAGCGACTCCACATTCTCCCCCGCTTACACTCTCGCCGAGATTTGGCCAGGAATGGCCCACTTGGCCCCTCCCTTCCCCCACGCCTCCGCCGACGACTCCACACGCAAGAGGAAGGACACCGCCTCCGAGGACGACTGCTCCAAGGTCCTCTCCTCCACCACCACCACCGCCAACCTATCCAATAATGATTCTGGTAGCAATAAACGGATGAAGTTAGGAGGGTCCAGCGTTGAAAACGATGGTTTGAAATCTGAGGCAGAAGCAAGTTCTGTGGGTGGTAACAAGTCAAGTGAACAAAGCACTAAACCTTGTGAGGCACCTAAGCAAGACTATATTCATGTGAGAGCAAGAAGGGGCCAAGCTACCGATAGCCACAGTCTAGCAGAGAGAGCAAGAAGAGAAAAGATCAGTGAGAGGATGAAAATTCTTCAGGATTTGGTGCCAGGGTGTAACAAGGTAATTGGTAAAGCACTTGTCCTAGACGAGATAATCAATTACATCCAGTCACTGCAGCATCAGTTCCTTTCAATGAAGCTTGAAGCAGTTAATTCAAGAATGAACATGAACCCTACTATTGATGGGTTTCCTTCAAAAGATGTTGGTACTCAGCCATTTGACATTGCTGGAATGGTATTTGGATCACAAGCAGCAAGGGGGTATGCTCAGGGATCACATCCTGGATGGCTGCATATGCAGATTGGTGGTGGTTTTGAGAGAACATCATAA 744 0.4839 MDPPLISDSTFSPAYTLAEIWPGMAHLAPPFPHASADDSTRKRKDTASEDDCSKVLSSTTTTANLSNNDSGSNKRMKLGGSSVENDGLKSEAEASSVGGNKSSEQSTKPCEAPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQHQFLSMKLEAVNSRMNMNPTIDGFPSKDVGTQPFDIAGMVFGSQAARGYAQGSHPGWLHMQIGGGFERTS 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02103 247 MobiDBLite consensus disorder prediction 26 113 - -
Pumo10g02103 247 Gene3D - 123 197 IPR036638 GO:0046983
Pumo10g02103 247 MobiDBLite consensus disorder prediction 95 110 - -
Pumo10g02103 247 MobiDBLite consensus disorder prediction 52 79 - -
Pumo10g02103 247 SMART finulus 132 182 IPR011598 GO:0046983
Pumo10g02103 247 MobiDBLite consensus disorder prediction 36 51 - -
Pumo10g02103 247 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 126 176 IPR011598 GO:0046983
Pumo10g02103 247 Pfam Helix-loop-helix DNA-binding domain 130 177 IPR011598 GO:0046983
Pumo10g02103 247 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 44 221 IPR024097 GO:0006355
Pumo10g02103 247 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 188 IPR036638 GO:0046983
Pumo10g02103 247 CDD bHLH_AtBPE_like 116 199 - -
Pumo10g02103 247 FunFam Basic helix-loop-helix transcription factor 123 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02103 Pumo-Chr10 28362164 28366307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02103 1 247 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 50.000 1.31e-71 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo10g02103 HLH 1.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02103 - - gmx:100777819 430.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g02103 10 28362164 28366307 Pumo10g02103 10 28362164 28366307 ECH