Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02098 ATGCCTCTCTCCGCCGCCTCCGCCGCCGCTGACTTCGCCGTCTCCGGCGAGATCATGCTGTTCGGCGTGAGAGTCGTGGTGGACTCCATGAGGAAGAGCGTCAGCATGAACAACCTCTCGCAGTACGAGCTCCCTCGCGACGCCGCCGCTGCCAACGCCAAAGACGACGCCGTCGGCGGCGGCGGATACGCCTCCGCCGACGACGCCGGTCCGATCAACTCCGGCAAGAACCGCAAGCGAGGGATTCCATGGACTGAGGAAGAACACAAGCTATTCTTGGTGGGGTTGCAGAAAGTGGGGAAAGGTGATTGGAGAGGGATCTCAAGGAACTATGTGAAAACCCGGACCCCAACTCAGGTTGCTAGCCATGCTCAGAAGTACTTTCTCCGCCGCACCAATCTCAATCGCCGTCGTCGTAGATCGAGCCTCTTTGACATCACCACCGAATCGGTAGCCCCACCATCTTGTTTTTCATGTGTTATGCTAAAGTTTGCTGTTGCTTTTGTGGCATGGAATTAG 519 0.5742 MPLSAASAAADFAVSGEIMLFGVRVVVDSMRKSVSMNNLSQYELPRDAAAANAKDDAVGGGGYASADDAGPINSGKNRKRGIPWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRTNLNRRRRRSSLFDITTESVAPPSCFSCVMLKFAVAFVAWN 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02098 172 NCBIfam myb-like DNA-binding domain, SHAQKYF class 79 130 IPR006447 GO:0003677
Pumo10g02098 172 SMART sant 80 130 IPR001005 -
Pumo10g02098 172 Pfam Myb-like DNA-binding domain 83 128 IPR001005 -
Pumo10g02098 172 CDD SANT 83 128 IPR001005 -
Pumo10g02098 172 Gene3D - 82 134 - -
Pumo10g02098 172 ProSiteProfiles SANT domain profile. 84 132 IPR017884 -
Pumo10g02098 172 FunFam transcription factor MYB1R1 82 133 - -
Pumo10g02098 172 PANTHER TRANSCRIPTION FACTOR KUA1 17 150 - -
Pumo10g02098 172 SUPERFAMILY Homeodomain-like 78 132 IPR009057 -
Pumo10g02098 172 ProSiteProfiles Myb-like domain profile. 76 128 IPR001005 -
Pumo10g02098 172 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 132 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02098 Pumo-Chr10 28312635 28313800 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo10g02098 Myb_DNA-binding 6.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02098 - - gmx:778056 228.024