Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02085 ATGTCTTCTTCGTCAACGCACCACACCTATAGCCGAAAGCAAAAATCTCTCGGCCTCCTCTGCACCAATTTTTTAAGCTTGTACAACAAAGAAGGTGTGCGATTAATCGGTCTAGATGATGCGGCTTCACGATTAGGAGTAGAGAGACGACGGATCTACGATATAGTTAATGTTTTAGAGAGTGTCGGCGTGCTAGCCAGAAAAGCTAAGAACCAGTATACATGGAAAGGGTTTTCTGCAATTCCTGCGGCTTTGCAAGAACTTAAGGATGAGGGTTTAAAGGAGAATCCTGGATCTCTTGATGACTCCAATGACAGTGCAAAAGCGTCCGATGATGAGGATGAAGAAGAAACATTTCCCAATGTTAATACTGAAAGTCAGAATGAAAGGAAAATCCTGATTCTGCCGCTCCTGTCAAATCCTCCAAGAATGTTACATCTAACTGATCCCACGTTGAACTCAATTCATCATTCACATTACTATTCCGTTTGTGCATTTGAAAGTGCTAAACTTACGTTCAGTGCCATTCCAACACATATCCAGACACGCACAAAACAGAAGGGAAAAATCTCTGGCATTGCTTACTCAGAATTTTGTCAAGCTTTTTGTCTGCTCTAA 618 0.4175 MSSSSTHHTYSRKQKSLGLLCTNFLSLYNKEGVRLIGLDDAASRLGVERRRIYDIVNVLESVGVLARKAKNQYTWKGFSAIPAALQELKDEGLKENPGSLDDSNDSAKASDDEDEEETFPNVNTESQNERKILILPLLSNPPRMLHLTDPTLNSIHHSHYYSVCAFESAKLTFSAIPTHIQTRTKQKGKISGIAYSEFCQAFCLL 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02085 205 MobiDBLite consensus disorder prediction 93 125 - -
Pumo10g02085 205 Pfam E2F/DP family winged-helix DNA-binding domain 13 77 IPR003316 GO:0005667|GO:0006355
Pumo10g02085 205 FunFam E2F transcription factor 8 7 79 - -
Pumo10g02085 205 Gene3D - 7 79 IPR036388 -
Pumo10g02085 205 PANTHER TRANSCRIPTION FACTOR E2F 5 169 IPR015633 GO:0000978|GO:0006357
Pumo10g02085 205 SMART E2F_TDP_2 12 77 IPR003316 GO:0005667|GO:0006355
Pumo10g02085 205 SUPERFAMILY "Winged helix" DNA-binding domain 11 75 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02085 Pumo-Chr10 28153151 28154561 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02085 7 95 E2F-DP Transcription Factor Family AT3G48160 82.022 1.62e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Pumo10g02085 E2F_TDP 2.2e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02085 K09391 - gmx:100818090 218.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g02085 10 28153151 28154561 Pumo10g02085 10 28153151 28154561 ECH
Pumo4g01364 4 17286311 17290603 Pumo10g02085 10 28153151 28154561 PCT