Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02084 ATGATCTCCCTTGACGAAGCTGCAAAGTTGTTGCTTGGAAATGCCCATAATACATCAATAATGAGAACAAAAGTCAGACGCCTATATGATATTGCGAATGTGTTATCCTCCATGAACCTAATCGAGAAGACTCATGCAACAAACACAAGAAAACCAGCATTCAGGTGGTTGGGTGTGAGAGGGAAAACATGGAGTGAATCAGTTGACTTAACTCACAATTCGAATGTCAAAGAGTCAGGGAAAAGGATGTTTGGAACTGACATCACAAACATAAGTTTTAAAAGGAGCAAAGTTGATTTGTCCATGGATGGTCAGAACTCTAAAATGCAAAACCAACAGGAAAATATTAGTCCCAGAGCTCAGCCGGAGAAAAGCAACTTAAAAAAAGATGCAAAACAGACTTCAAAGAGCTATCAGTTTGGCCCTTTCGCTCCAGCTTATGCGCCCAAAGTTGGAACATCTGAAAATAATAGTGTGAAGCAGGTGCATGACTGGGAGAGCCTCGCACAGGTGCATCGTCCTCAATATCAAAACCAAGCTTTGAAAGACCTATTCTCTCACTACATGGAAGCATGGAAATCTTGGTACTCTGAAGTTGCTGGGAAAAGGTCAACGAAAACTTTATAA 627 0.4099 MISLDEAAKLLLGNAHNTSIMRTKVRRLYDIANVLSSMNLIEKTHATNTRKPAFRWLGVRGKTWSESVDLTHNSNVKESGKRMFGTDITNISFKRSKVDLSMDGQNSKMQNQQENISPRAQPEKSNLKKDAKQTSKSYQFGPFAPAYAPKVGTSENNSVKQVHDWESLAQVHRPQYQNQALKDLFSHYMEAWKSWYSEVAGKRSTKTL 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02084 208 Gene3D - 1 60 IPR036388 -
Pumo10g02084 208 MobiDBLite consensus disorder prediction 104 122 - -
Pumo10g02084 208 PANTHER TRANSCRIPTION FACTOR E2F 1 177 IPR015633 GO:0000978|GO:0006357
Pumo10g02084 208 SUPERFAMILY "Winged helix" DNA-binding domain 3 59 IPR036390 -
Pumo10g02084 208 SMART E2F_TDP_2 1 58 IPR003316 GO:0005667|GO:0006355
Pumo10g02084 208 Pfam E2F/DP family winged-helix DNA-binding domain 2 58 IPR003316 GO:0005667|GO:0006355
Pumo10g02084 208 MobiDBLite consensus disorder prediction 104 135 - -
Pumo10g02084 208 FunFam E2F transcription factor-like E2FE 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02084 Pumo-Chr10 28147556 28153053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02084 1 199 E2F-DP Transcription Factor Family AT3G48160 52.941 4.63e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Pumo10g02084 E2F_TDP 4.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02084 K09391 - gmx:100776170 311.997