Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02082 ATGGCAATCTCAGTACCCAGCAGACAACTTTTCATAAATGGAGAGTGGAAAGTCCCTCTCCTCAATAACCGGATTCCGATCATTAACCCCGCCACTGAAGACATCATAGGGCATATCCCAGCTGCTACTAAGGAAGATGTTGACCTTGCGGTGGATGCTGCTAAAAGAGCCTTTTCCAGGAACAAAGGAAGCGATTGGTCTTCCGCTCCTGGCTCTGTTCGTGCTCGCTATCTTCGAGCCATCGCTTCAAAGATAACGGAGAAAAAGGATGAACTAGGAAAGCTTGAAGCAATTGATTGTGGAAAACCACTAGAAGAAGCATTGGCAGACCTGGATGATGTTGTTGGTTGTTTTAACTACTATGCTGAGCTTGCAGAAGGGTTGGATGCAAAGCAAAATGCTCCTGTATCCCTTCCTATGGAAACTTTCAAGAGTTATGTTCTCAAGGAGCCCATTGGGGTTGTTGCATTAATTACTCCATGGAATTATCCACTCTTGATGGCTACATGGAAGGTTGCTCCTGCTCTGGCTGCTGGTTGTACTGCAATATTGAAACCATCTGAATTGGCATCTGTGACCTGTTTGGAGCTGGCTGAAATATGCAGAGAAGTGGGCCTTCCTCCTGGTGTATTAAATATTGTTACTGGATTAGGCAATGAAGCTGGTGCTCCTTTGGCATCTCATCCTGATGTAGACAAGATTTCCTTTACTGGAAGCTCTGCAACTGGAAGCAAGATTATGACAGCTGCAGCACAGCTAACCAAGCCTGTTTCTCTAGAGCTTGGTGGAAAAAGCCCAATCATTGTTTTTGAGGATGTTGACCTTGATAAGACTGCTGAATGGACCATCTTTGGCTGCTTCTTTACAAATGGTCAGATATGCAGTGCAACATCTCGCCTTATTGTGCACGAAAGTATAGCAACAGAATTTGTAAATAGACTTGTGAAATGGGCCAAAAACATCAAAATTTCAGATCCCTTGGAAGAAGGATGCAGGCTAGGCCCTATTGTTAGTGAAGGACAGTATAAAAAAGTGTTGAATTTTATTTCAACTGCTAAGAGTGAGGGTGCTACAATTTTGACTGGAGGGTCTCGCCCAGAGCATTTGAAAAAGGGGTACTTTGTTGAACCAACCATCATAACTGATGTGACTACCTCAATGCAAATTTGGAGAGAAGAAGTTTTTGGACCTGTACTCTCTGTGAAAACATTCAGTACCGAGGAAGAAGCTATTGAACTAGCAAATGACACCCACTACGGCTTAGGGTCTGCTGTAATGTCAAAAGATCTAGAGAGATGTGAGCGCATATCTAAGGCAATTCAGGCTGGAATTGTATGGATAAATTGTGCTCAACCAAGCTTCATTCAAGCCCCATGGGGAGGCATAAAACGTAGTGGTTTCGGTCGTGAACTAGGAGAATGGGGACTGGAAAACTATTTAAGCGTGAAGCAAGTGACAAAGTACATATCTGATGAACCGTGGGGCTGGTATCAGTCCTCCTTCAAAGCTGTGATATGA 1518 0.4381 MAISVPSRQLFINGEWKVPLLNNRIPIINPATEDIIGHIPAATKEDVDLAVDAAKRAFSRNKGSDWSSAPGSVRARYLRAIASKITEKKDELGKLEAIDCGKPLEEALADLDDVVGCFNYYAELAEGLDAKQNAPVSLPMETFKSYVLKEPIGVVALITPWNYPLLMATWKVAPALAAGCTAILKPSELASVTCLELAEICREVGLPPGVLNIVTGLGNEAGAPLASHPDVDKISFTGSSATGSKIMTAAAQLTKPVSLELGGKSPIIVFEDVDLDKTAEWTIFGCFFTNGQICSATSRLIVHESIATEFVNRLVKWAKNIKISDPLEEGCRLGPIVSEGQYKKVLNFISTAKSEGATILTGGSRPEHLKKGYFVEPTIITDVTTSMQIWREEVFGPVLSVKTFSTEEEAIELANDTHYGLGSAVMSKDLERCERISKAIQAGIVWINCAQPSFIQAPWGGIKRSGFGRELGEWGLENYLSVKQVTKYISDEPWGWYQSSFKAVI 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02082 505 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 458 IPR016163 GO:0016620
Pumo10g02082 505 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 483 IPR016162 GO:0016491
Pumo10g02082 505 PANTHER ALDEHYDE DEHYDROGENASE 5 501 - -
Pumo10g02082 505 FunFam NAD/NADP-dependent betaine aldehyde dehydrogenase 12 277 - -
Pumo10g02082 505 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 287 298 IPR016160 GO:0016491
Pumo10g02082 505 CDD ALDH_F10_BADH 27 487 - -
Pumo10g02082 505 SUPERFAMILY ALDH-like 5 486 IPR016161 GO:0016491
Pumo10g02082 505 Pfam Aldehyde dehydrogenase family 23 485 IPR015590 GO:0016491
Pumo10g02082 505 FunFam Betaine aldehyde dehydrogenase 263 454 - -
Pumo10g02082 505 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 259 266 IPR029510 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02082 Pumo-Chr10 28121904 28128192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02082 1 499 Aldehyde Dehydrogenase Gene Family AT1G74920 78.758 0.0 848
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02082 K00130 - gmx:100170755 980.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g02082 10 28121904 28128192 Pumo10g02082 10 28121904 28128192 ECH
Pumo4g01365 4 17291487 17295495 Pumo10g02082 10 28121904 28128192 PCT