Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02079 ATGGGTGGCAACGGCAAGCACAGGTGGAAATTCTCCTTCCTCCGTTCCTCATCCTCGAAGCCGGAACCGAACCAAGCTCCGAAGGAGTTCACGTGCCCCATTTCGGGATCACTAATGTCCGACCCTGTCGTCGTCGCTTCGGGCCAAACCTTCGAACGCGTCGCCGTTCAAGTCTGCAAGGACTTTAACTTCTCCCCGAAGCTAGACGACGGCACCCGACCCGATTTCTCAACAATTATCCCCAACCTCGCCATCAAAACGACGATTCTCCACTGGTGCGACAAGTCCCACACCGAGCACCCGCGCGCACCGGATTACGCCTCCGTGGAGCGCCACGTCAGAGAAGCAATGGCGGCGTCAGGGGAAAGGGAAAATGAAAACGAAGACCGAATTAGGGTTTCGGAAAAGGAGCTTCTCAACGCGGTGGCCGATAATCCTCCAGTGATTTATTCCCACGCCGCCACCGAGTTAGGCCCCCGAGTCAACCACTTCAACTCGGGATCCTCCTCGGAGGAATCGGTCATAATCCCGCCGAGTCCAGGAACGCCGTTACCATTAACGATTCGTCCAACATCGAAATCGAGAAACCCTAACACACCGGCATCGGAGGAAGAAGAAGGAATTTTGAAGAAATTAAAAAGCAGTGAGGTGTTTGAGCAAGAAGAAGGCGTAATCGCGCTGAGAAAGACCACGAGGAACAAAGAGGAGGCTAGGGTTTCGCTCTGCACGCCGCGGGTGCTGTTGGCGCTGCGCGGTTTAATCGCGTCCCGATACGGCGTCGTTCAGGTCAACGCGGTCGCGTCTCTGGTCAACCTTTCGCTGGAGAAGCAGAACAAGGTGAAGATCGTGAGGTCAGGATTTGTTCCGTTCTTAATCGATGTTTTGAAGGGGGGATTGGGTGAGTCGCAGGAGCACGCTGCGGGCGCGCTTTTCAGCTTGGCGCTGAACGACGACAACAAAATGGCGATCGGCGTGCTCGGCGCGCTGCAGCCGCTGATGCACGCGCTGCGCGCCGAGTCGGAGCGGACTCGGCACGACTCGGCGCTCGGCGCTCTACCATTTGTCGCTCGTTCAGAGCAACCGAGTTAA 1089 0.5675 MGGNGKHRWKFSFLRSSSSKPEPNQAPKEFTCPISGSLMSDPVVVASGQTFERVAVQVCKDFNFSPKLDDGTRPDFSTIIPNLAIKTTILHWCDKSHTEHPRAPDYASVERHVREAMAASGERENENEDRIRVSEKELLNAVADNPPVIYSHAATELGPRVNHFNSGSSSEESVIIPPSPGTPLPLTIRPTSKSRNPNTPASEEEEGILKKLKSSEVFEQEEGVIALRKTTRNKEEARVSLCTPRVLLALRGLIASRYGVVQVNAVASLVNLSLEKQNKVKIVRSGFVPFLIDVLKGGLGESQEHAAGALFSLALNDDNKMAIGVLGALQPLMHALRAESERTRHDSALGALPFVARSEQPS 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02079 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 106 IPR013083 -
Pumo10g02079 362 MobiDBLite consensus disorder prediction 11 25 - -
Pumo10g02079 362 SUPERFAMILY ARM repeat 207 347 IPR016024 -
Pumo10g02079 362 PANTHER U BOX DOMAIN-CONTAINING 26 349 - -
Pumo10g02079 362 ProSiteProfiles U-box domain profile. 25 99 IPR003613 GO:0004842|GO:0016567
Pumo10g02079 362 MobiDBLite consensus disorder prediction 164 207 - -
Pumo10g02079 362 Pfam U-box domain 26 95 IPR003613 GO:0004842|GO:0016567
Pumo10g02079 362 MobiDBLite consensus disorder prediction 1 28 - -
Pumo10g02079 362 FunFam RING-type E3 ubiquitin transferase 9 100 - -
Pumo10g02079 362 SUPERFAMILY RING/U-box 12 100 - -
Pumo10g02079 362 Gene3D - 185 360 IPR011989 -
Pumo10g02079 362 SMART Ubox_2 29 92 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02079 Pumo-Chr10 28013478 28014597 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02079 1 350 U-box Gene Family AT5G65200 55.673 2.93e-129 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02079 - - gmx:100784564 588.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g02079 10 28013478 28014597 Pumo10g02079 10 28013478 28014597 ECH