Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02063 ATGGTGGCCAGGTCATGCTTGAATTTGTTGGACCTGGTATCAGGGGATATGCTAAATTTCCCTCAAACTCCCAGATCTCTTCCGCGAGTTATGACTGATCCAGTGATCATGTCTGATGGAGATGTTAAACAAAGTAATGATGATGCTTCGAGTGTTTTCTCATCAGAACACCATCGCAAGATAATTATAGTATCAAATTCTCTTCCTCTCAATGCAAAAAGGGATAAAATATCTGGCAAATGGTGCTTCAGTTATGATGAGGATTCAATTTTTTGGCAGTTAAAGGATGGTCTCTCTCCTGATGCTGATGTTGTTTATGTGGGATCTCTGAAGGTTGATGTTGATGCAAATGAGCAAGAGAAAGTTTCCCATCAGTTGCTGGAGGAATTCAATTGTGTGCCTACTTTTATTCCTTCAGATCTCTACAAACAATTCCATGATGGATTCTGCAAGCAACAATTGTGGCCTCTATTCCATTACATGATGCCCATGTATCCAGGCAATCGCCGCTTTGATAGGTCACAGTGGCAGGCTTATGTTTCTGCTAACAAGATATTTGCAGATAAAGTCATGGAGGTCCTTAATCCAGAAGATGATTATGTATGGGTTCATGATTATCATCTTATGGTCCTTCCAACATTTCTGCGAAAGCGGTGTAGTCGAGTTCGGCTTGGTTTTTTCCTCCACAGTCCATTTCCTTCATCAGAAATTTATAAAACTCTGCCTGTCAGAGGTGAAATTTTGAAAGCACTGCTTAATGCAGATTTAGTTGGTTTCCACACCTTTGATTATGCTCGCCATTTTCTCTCCTGCTGCAGGCGAATGCTTGGCTTGGAACACGAATCCAAGAGGGGTTACATTGGACTTGAATACTTTGGCCGTACAATATTCATTAAAATATTGCCTGCTGGGATTCACATGGGACGACTTCAATCTGCCTTAGATCACCCTTCCTCTTCTAACAAAGTCAGAGAAATCCACCAACAATTTAATGGGAAAAAGCTTATTGTTGGTGTTGATGATATGGACATATTCAAAGGTGTCAGTTTAAAATTCTTGGCCATGGAACAACTCCTGCAGCAATATCCAGAACTGCAAGGTGAATTAACACTGATCCAAATTTTAAATCCACCAAGTACTGCTGACAAATATGTTGAGGATGCAAAGGAGGATGCCTATATTACTGCCAAAAGGATAAATGAAAGGTTTGGTTCGGAAGGTTATGAACCTATCATCATCATTGATCGCCATGTTCCTTTCTATGAGAAGGCAGCCTATTATGCTTTGGCAGAATGTTGCATTGTGAATGCAGTGCGTGATGGTTTGAATTTGGTTCCATACAAGTACACTGTGTGCAGGCAGGGAAGTTCTAAACTGGATGAAGCTTTAGAAATTGCTTCTGACTTCCCGCGTGTAAGTGCACTTGTTGTTTCTGAGTTTATAGGTTGCTCACCATCTCTTAGTGGGGCAATAAGGGTAAACCCATGGGATATTGATGCAGTAGCTGAAGCACTAAATTTGGCAATCACAATGCCTGATGGAGAGAAGCAGCTTCGACATGAAAAGCACTATCGATATGTTAGTTCTCATGATGTGGCCTACTGGGCTCGGAGCTTTGAGCAAGATCTAGTGTTATCATGCAAGGATCACTATAGTAACCGATGCTGGGGCATTGGCTTTGGCCTGAACTTCAGAATTTTGTCCCTCTCTCCTAGTTTCAGGAGGCTATCCTTAGACCACATTGTCCCTGCATATAAGAGGAGCAATTGCAGGGCAATCTTTTTGGATTATGATGGCACTGTTGTACCTCAAGCTTCCATTGTTAAACCCCCCAGTCCTGAAGTCATATCTGTGCTAAATAGTCTTTGCAGTGATGTTAACAACACTGTGTTTATTGTTAGTGGCAGGGGAAAAACCTCACTGAGTGAATGGTTTGATCAGTGTGAGAATCTTGGTATAGCAGCTGAGCATGGTTATTTTATAAGGTGGGGGAAACATACTAGTTGGCAAATGAGTCATGCAGATACAGATTTTGCATGGAAAAAGATTGCTGAACCTGTGATGAGATCTTATATGGAGGCCACAGACGGCTCCTCTGTAGAGACCAAAGAGAGTGCCTTGGTATGGCATTACCCACCACAAATCTTTGCATGCACTGTTGGACAAAAACCAAGCAAAGCTAGATACTACCTAGACGACACTGTGGATGTGATGACATTACTTGAGGGTCTTGGTGCTGCTTCAGGGCCTCAATCAAGATATTCTACAGAAACCCCATTTGAGAAAGGAGAAGTATGTTTTGAGAACATTGTTTAA 2316 0.4175 MVARSCLNLLDLVSGDMLNFPQTPRSLPRVMTDPVIMSDGDVKQSNDDASSVFSSEHHRKIIIVSNSLPLNAKRDKISGKWCFSYDEDSIFWQLKDGLSPDADVVYVGSLKVDVDANEQEKVSHQLLEEFNCVPTFIPSDLYKQFHDGFCKQQLWPLFHYMMPMYPGNRRFDRSQWQAYVSANKIFADKVMEVLNPEDDYVWVHDYHLMVLPTFLRKRCSRVRLGFFLHSPFPSSEIYKTLPVRGEILKALLNADLVGFHTFDYARHFLSCCRRMLGLEHESKRGYIGLEYFGRTIFIKILPAGIHMGRLQSALDHPSSSNKVREIHQQFNGKKLIVGVDDMDIFKGVSLKFLAMEQLLQQYPELQGELTLIQILNPPSTADKYVEDAKEDAYITAKRINERFGSEGYEPIIIIDRHVPFYEKAAYYALAECCIVNAVRDGLNLVPYKYTVCRQGSSKLDEALEIASDFPRVSALVVSEFIGCSPSLSGAIRVNPWDIDAVAEALNLAITMPDGEKQLRHEKHYRYVSSHDVAYWARSFEQDLVLSCKDHYSNRCWGIGFGLNFRILSLSPSFRRLSLDHIVPAYKRSNCRAIFLDYDGTVVPQASIVKPPSPEVISVLNSLCSDVNNTVFIVSGRGKTSLSEWFDQCENLGIAAEHGYFIRWGKHTSWQMSHADTDFAWKKIAEPVMRSYMEATDGSSVETKESALVWHYPPQIFACTVGQKPSKARYYLDDTVDVMTLLEGLGAASGPQSRYSTETPFEKGEVCFENIV 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02063 771 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 53 311 - -
Pumo10g02063 771 Pfam Trehalose-phosphatase 594 711 IPR003337 GO:0003824|GO:0005992
Pumo10g02063 771 Gene3D - 590 757 IPR023214 -
Pumo10g02063 771 Gene3D Glycogen Phosphorylase B; 51 311 - -
Pumo10g02063 771 Gene3D Glycogen Phosphorylase B; 312 528 - -
Pumo10g02063 771 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 590 707 - -
Pumo10g02063 771 SUPERFAMILY HAD-like 591 712 IPR036412 -
Pumo10g02063 771 CDD GT20_TPS 60 543 IPR001830 GO:0003824|GO:0005992
Pumo10g02063 771 FunFam Alpha,alpha-trehalose-phosphate synthase 313 528 - -
Pumo10g02063 771 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 543 - -
Pumo10g02063 771 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 29 711 IPR001830 GO:0003824|GO:0005992
Pumo10g02063 771 Pfam Glycosyltransferase family 20 60 543 IPR001830 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02063 Pumo-Chr10 27692946 27696053 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02063 712 771 Trehalose Biosynthesis Gene Families AT1G23870 52.459 1.03e-11 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02063 K16055 - gmx:100812031 1385.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g02063 10 27692946 27696053 Pumo10g02063 10 27692946 27696053 ECH
Pumo4g01390 4 17615950 17618884 Pumo10g02063 10 27692946 27696053 PCT