Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02060 ATGAGCAGCGATTTCTACCGATTCGCGGTTTCATCCCACTTCAGCAGCTTCCCAAAATCCTTCTCTCTACGAAAGAAAGTCCCATGGTGGTACCAAATCCTCGACCCTCGTTCGACGTTCGTGGCACAATGGAACCGCACGTTCCTCTACGTGTGCATAGCGGCGCTGTTCCTAGACCCCCTCTACTTCTACTTCCCCATCACCGGGGACAAGGCGTGCATGCAAACTGACATCATCCTCGGCGTATTCGTCACGTTCTCCCGCACCGTTGCCGACCTCTTCTTCCTCTTCCACATGGTTCTCAAGTTCCGCACGGCCTTCGTCTCCCCCACCTCCCGCGTCTATGGCCGCAAAGAACTCGTCATCGATCCTCGCCAGATTGCCTCGCGCTACCTCAGGTCGGATTTCTTCATTGATCTCCTCGCCACCCTTCCTTTGCCTCAGATAGTGATCTGGTTCGTGATTCCGGCGGTGAAAAATTCAACGGTGGCTCATGTAAATCACACCCTGTCTTTGATTGTTCTCATTCAGTTTATTCCTCGGTTGTTCCAGATTTTTCCTCTGCAACGGAGAATCTTGAAGACTAGTGGGCTTATTGCCAAAACTGCCTTGGCAGGGGCTTTATACAATCTTGGTTCCTACATGCTAGCCAGCCATATAAGAGAAAGGAGCATCGTGGTACGTGTCATCAATTCAGCGACAGTACGAGTGTTGGAGAATAACATGCAAGAAGAGATGAACAGAACGCACTCTCCATCTTGCAATCCTTCATTTCTCGACTGTGGTACCCTCACCAACCACGAGAGGCAAGCTTGGTTCAAACGCACCAGAGTTCTCAGCGATTGCGATGCCCTCAATGATAAAAACGAATTCCAGTTTGGAATGTTCGCTGATGCTTTCACTGATCATGTCTCCTCCTCAAGATTCGTCCAAAAATACTTTTACTGCCTCTGGTGGGGTTTGAAGAATCTAAGTTCATATGGTCAAAATCTTCAAACCAGCACTTACAGTGGTGAAACATTGTTTTCAAGTTTCATATGCATCGCAGGTCTAATCTTGTTTGCTCATCTCATTGGTAACATGCAGAATTATCTGCAATCTACAACTGCAAGAGTTGAAGAGTGGAGACTTAAACAGAAAGATACAGAAGAGTGGATGAATCACCGGCAGCTTCCACCAGAACTGCAACAACGTGTTCGGCGGTTTGTTCAATATAAATGGCTTGCCACCAGAGGAGTAGACGAAGAAGCCATTTTGCGCGCTTTGCCTTTGGACCTTCGCCGCCAGATTCAGAGGCATCTCTGTCTCGACATTGTTCGCCGGGTTCCCTTTTTTGGTCAAATGGACGACCAGCTTCTAGATGCAATATGCGAACGCCTTGTTTCATCCCTAAACACAAAAGACACACACGTAGTTCGCGAAGGTGATCCAGTGAGAGAAATGCTTTTCATCATCAGAGGGCAAGTAGAAAGCTCCACAACCGATGGTGGAAGAACAGGTTTCTTCAACTCCATCACCCTCAGACCCGGTGACTTTTGCGGCGAAGAATTGCTAACATGGGCCTTGATGCCCTCTTCAAGTCTCAACCTTCCATCTTCCACAAGAACAGTGAAGACCCTCACCGAAGTGGAAGCATTTGCCCTAAGAGCCGAAGACCTCAAATTTGTTGCGAGCCAGTTCAAGCGCCTCCACAGCAAGAAGCTGCAACACGCTTTTAGGTACTATTCGCATCAATGGAGGGCTTGGGGGGCACACTTTATACAAGCTGCGTGGAGACGCCACCGAAAGAGGAAACTGGCGATGGAGTTGTTGGAGAAGGAGAACTTGCTCTACACAAATGTGATAGAAGATGATGATGATGATGATGAAGGTGGTGCAGGTGAGAGTTCAATGGCGGGGCATACTCAGAATCTTGGGGCCACAGTTTTGGCTTCAAAGTTTGCTGCAAACACTAGGAAAGGGGCTGTTAAAAAGGTGACTATTAATCTTCCTGATGCTGGCAGTTTGAAGATGCCCAAGATGTTCAAACCAACGGAACCTGATTTCTCAACATTCCAAGATGATTAG 2067 0.4804 MSSDFYRFAVSSHFSSFPKSFSLRKKVPWWYQILDPRSTFVAQWNRTFLYVCIAALFLDPLYFYFPITGDKACMQTDIILGVFVTFSRTVADLFFLFHMVLKFRTAFVSPTSRVYGRKELVIDPRQIASRYLRSDFFIDLLATLPLPQIVIWFVIPAVKNSTVAHVNHTLSLIVLIQFIPRLFQIFPLQRRILKTSGLIAKTALAGALYNLGSYMLASHIRERSIVVRVINSATVRVLENNMQEEMNRTHSPSCNPSFLDCGTLTNHERQAWFKRTRVLSDCDALNDKNEFQFGMFADAFTDHVSSSRFVQKYFYCLWWGLKNLSSYGQNLQTSTYSGETLFSSFICIAGLILFAHLIGNMQNYLQSTTARVEEWRLKQKDTEEWMNHRQLPPELQQRVRRFVQYKWLATRGVDEEAILRALPLDLRRQIQRHLCLDIVRRVPFFGQMDDQLLDAICERLVSSLNTKDTHVVREGDPVREMLFIIRGQVESSTTDGGRTGFFNSITLRPGDFCGEELLTWALMPSSSLNLPSSTRTVKTLTEVEAFALRAEDLKFVASQFKRLHSKKLQHAFRYYSHQWRAWGAHFIQAAWRRHRKRKLAMELLEKENLLYTNVIEDDDDDDEGGAGESSMAGHTQNLGATVLASKFAANTRKGAVKKVTINLPDAGSLKMPKMFKPTEPDFSTFQDD 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02060 688 Gene3D - 71 368 - -
Pumo10g02060 688 Gene3D Jelly Rolls 442 562 IPR014710 -
Pumo10g02060 688 SMART cnmp_10 444 575 IPR000595 -
Pumo10g02060 688 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 25 682 - -
Pumo10g02060 688 CDD CAP_ED 444 575 IPR000595 -
Pumo10g02060 688 FunFam Cyclic nucleotide-gated ion channel 1 442 560 - -
Pumo10g02060 688 FunFam Cyclic nucleotide-gated ion channel 1 371 435 - -
Pumo10g02060 688 Gene3D Helix hairpin bin 370 435 - -
Pumo10g02060 688 SUPERFAMILY Voltage-gated potassium channels 35 366 - -
Pumo10g02060 688 SUPERFAMILY cAMP-binding domain-like 373 569 IPR018490 -
Pumo10g02060 688 ProSiteProfiles cAMP/cGMP binding motif profile. 444 574 IPR000595 -
Pumo10g02060 688 MobiDBLite consensus disorder prediction 667 688 - -
Pumo10g02060 688 Pfam Ion transport protein 44 372 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pumo10g02060 688 Pfam Cyclic nucleotide-binding domain 467 555 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02060 Pumo-Chr10 27659592 27664960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02060 10 682 Ion Channels AT3G48010 63.662 0.0 880
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02060 K05391 - gmx:100783672 1254.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g02060 10 27659592 27664960 Pumo10g02060 10 27659592 27664960 ECH