Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02051 ATGGAGATCGTGATTTCCTTGATCATTTTGTTTGCGGGGATAGCAATTTTGGTTGTTATCCATGTCTGCATCGTGGGGAGGGCCTTCAGAGCGAACAATAATAATCACCATCATCATGGTCAACATGAAGAAGGTACTCATGGCCACAGCATCAGTGCCATGAAGAGAATGTTTGGTGGCGACAACATTGGTGACCTGAAGAACCTTCCTTGCTTTGAATACGAGGACAAAGGGTGCTGCAGCCTCGTGGATTGTGCTGTTTGCTTGGAGAATTTTAAGGTTGGTGATGTGTGCAGGTTGTTGCCCAATTGTGGCCACAGCTTCCATGTGCAGTGTATAGACTCGTGGATACTGCAAACACCCATTTGCCCCATTTGTAGAACATGGGTTCATTCACCACCAGTTGTGAGGGAACATAGTGCTGTTTCTGAAAATATACAAATTGAAACTGCTGCATAG 459 0.4532 MEIVISLIILFAGIAILVVIHVCIVGRAFRANNNNHHHHGQHEEGTHGHSISAMKRMFGGDNIGDLKNLPCFEYEDKGCCSLVDCAVCLENFKVGDVCRLLPNCGHSFHVQCIDSWILQTPICPICRTWVHSPPVVREHSAVSENIQIETAA 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02051 152 Pfam Ring finger domain 84 127 IPR001841 -
Pumo10g02051 152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 130 IPR013083 -
Pumo10g02051 152 FunFam RING-H2 finger protein ATL2K 61 133 - -
Pumo10g02051 152 SUPERFAMILY RING/U-box 68 134 - -
Pumo10g02051 152 SMART ring_2 85 126 IPR001841 -
Pumo10g02051 152 ProSiteProfiles Zinc finger RING-type profile. 85 127 IPR001841 -
Pumo10g02051 152 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 3 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02051 Pumo-Chr10 27597119 27597970 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02051 66 132 Rapid Response to Elicitors AT3G16720 44.776 1.42e-16 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02051 - - gmx:102662675 242.276