LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo10g02050	ATGAAGGAAGGAAGTGATGGGTTTGTGAGGGCAGATCAGATTGATCTGAAGAGCATCGATGAGCAGCTTGAGAGGCACCTCAGCAAGGTGCTGATGAAGCAGAAGGAAGAGGATGATGCTGGCTCTGATCACTCTCGCCACTCTAGCTCCTTTGCCACTGCCACTAAGTTCAAAAGTGTGGCGGGTAGTGCTGGTGCCACTACCTTCAAGAAGCAGAGGCTGGAGTGGGAAATTGACCCTTCTAACCTCATCATCAAGAGTGTCATAGCCAGGGGAACTTTCGGCACTGTCCACCGTGGCATCTACGATGGCCAAGATGTTGCTGTTAAAATGCTGGACTGGGGTGAAGAAGGGCACCGGACAGAGGCTGAAATTGCTGCCCTCAGGTCAGCGTTTACACAAGAAGTTGCTGTTTGGCATAAACTTGAACATCCTAATGTCACTAAGTTTATAGGGGCAACAATGGGGTCTTCAGAATTACAGATACAGACTGATAATGGTCTAATTAGCATGCCAAGCAATATCTGCTGTGTAGTTGTAGAGTATCTTGCTGGAGGTACGCTGAAATCTTTCCTAATAAAGAATAGGAGGAGGAAGTTAGCTTTTAAGGTTGTCATCCAGCTGGCACTTGATCTCGCAAGAGGGCTGAGTTATCTTCACTCTCAGAAGGTTGTCCACAGAGATGTAAAGACAGAGAACATGCTGTTGGATAAGACGCGCACTGTCAAAATTGCTGATTTTGGAGTTGCACGCGTTGAAGCATCAAATCCTAATGACATGACTGGGGAGACTGGTACACTTGGTTACATGGCTCCTGAGGTTTTGAATGGCAACCCCTATAACAGGAAATGTGATGTGTACAGTTTTGGCATCTGTTTGTGGGAAATATATTGCTGTGACATGCCATATCCTGACCTAAGTTTCTCAGAGATTACTTCAGCCGTCGTTCGCCAGAATCTGAGACCAGAAATACCAAGATGTTGCCCAAGTTCTCTGGCAAATGTGATGAAGCGATGCTGGGACGCCAATCCTGATAAACGGCCCGAAATGGATGAGGTAGTTTCCATGATAGAGGCTATTGACACATCCAAAGGTGGAGGTATGATCCCTGTTGATCAGCAGCAGGGTTGTTTTTGCTTCCGTAAGCACAGAGGACCTTGA	1161	0.4677	MKEGSDGFVRADQIDLKSIDEQLERHLSKVLMKQKEEDDAGSDHSRHSSSFATATKFKSVAGSAGATTFKKQRLEWEIDPSNLIIKSVIARGTFGTVHRGIYDGQDVAVKMLDWGEEGHRTEAEIAALRSAFTQEVAVWHKLEHPNVTKFIGATMGSSELQIQTDNGLISMPSNICCVVVEYLAGGTLKSFLIKNRRRKLAFKVVIQLALDLARGLSYLHSQKVVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEITSAVVRQNLRPEIPRCCPSSLANVMKRCWDANPDKRPEMDEVVSMIEAIDTSKGGGMIPVDQQQGCFCFRKHRGP	386

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo10g02050	386	Gene3D	Phosphorylase Kinase; domain 1	72	166	-	-
	Pumo10g02050	386	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	48	360	-	-
	Pumo10g02050	386	Gene3D	Transferase(Phosphotransferase) domain 1	184	376	-	-
	Pumo10g02050	386	FunFam	Serine/threonine-protein kinase HT1	183	368	-	-
	Pumo10g02050	386	CDD	STKc_MAP3K-like	89	357	-	-
	Pumo10g02050	386	ProSiteProfiles	Protein kinase domain profile.	83	360	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo10g02050	386	Pfam	Protein tyrosine and serine/threonine kinase	85	356	IPR001245	GO:0004672\|GO:0006468
	Pumo10g02050	386	SUPERFAMILY	Protein kinase-like (PK-like)	67	356	IPR011009	-
	Pumo10g02050	386	SMART	serkin_6	83	360	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo10g02050	386	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	224	236	IPR008271	GO:0004672\|GO:0006468
	Pumo10g02050	386	PRINTS	Tyrosine kinase catalytic domain signature	284	306	IPR001245	GO:0004672\|GO:0006468
	Pumo10g02050	386	PRINTS	Tyrosine kinase catalytic domain signature	328	350	IPR001245	GO:0004672\|GO:0006468
	Pumo10g02050	386	PRINTS	Tyrosine kinase catalytic domain signature	180	193	IPR001245	GO:0004672\|GO:0006468
	Pumo10g02050	386	PRINTS	Tyrosine kinase catalytic domain signature	218	236	IPR001245	GO:0004672\|GO:0006468
	Pumo10g02050	386	FunFam	Kinase suppressor of Ras 1	72	167	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo10g02050	Pumo-Chr10	27578918	27583403	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo10g02050	6	386	MAP Kinase Kinase Kinase	AT3G22750	64.156	0.0	533

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Pumo10g02050		PK_Tyr_Ser-Thr	7.6e-64	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo10g02050	-		-	gmx:100809898	778.859