Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02049 ATGAAGAAGAGATTAGCAAGCACCAGCAATGACTCCTCTAAACTTGATCGCAAAACCATTGAAAGGAACCGCAGAATTCACATGAAAACTCTCTGCCATCAGCTTTCTTCTCTTATTCCTCCCAACCTCAAACCACCCAAATCCAAGCTGATGCTAGGGCAGCAGGACCAGCTGGATCTTGCAGCAAGGTATATAAAGCACATGAGAGAGAGAATAGAGAAATTGAAGAGGCAGAAGGAGCAAGCCATGTCAAACCAAAGCAACGATGATAGAAAAATGTTCAATAACAATGTTGAGTCCAAATTGCCAATACTTGAGCTTAGAGACTTGGGTTCCGGCATCGAAGTGATGTTGGTGAGTGGGTTGAACAAGACATTCATGTTGTACGAAGTCATTAGTGTGCTTGAGGAAGAAGGTGCTGAAGTTGTCACTGCAAGCTTTTCAACTGTAGGCGACAAGATATTTTACGTTGTTCATGCTCAGGTTAAAATTTCAAGAGTGGGAGTTGAGACCACGAGGGTATATGAGAGACTTCAAGAGTTTATTGCCCCACTAGAAATCTGA 564 0.4273 MKKRLASTSNDSSKLDRKTIERNRRIHMKTLCHQLSSLIPPNLKPPKSKLMLGQQDQLDLAARYIKHMRERIEKLKRQKEQAMSNQSNDDRKMFNNNVESKLPILELRDLGSGIEVMLVSGLNKTFMLYEVISVLEEEGAEVVTASFSTVGDKIFYVVHAQVKISRVGVETTRVYERLQEFIAPLEI 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02049 187 Pfam Helix-loop-helix DNA-binding domain 17 68 IPR011598 GO:0046983
Pumo10g02049 187 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 16 85 IPR036638 GO:0046983
Pumo10g02049 187 MobiDBLite consensus disorder prediction 1 20 - -
Pumo10g02049 187 Coils Coil 58 92 - -
Pumo10g02049 187 Gene3D - 13 94 IPR036638 GO:0046983
Pumo10g02049 187 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 12 68 IPR011598 GO:0046983
Pumo10g02049 187 SMART finulus 18 74 IPR011598 GO:0046983
Pumo10g02049 187 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 9 180 - -
Pumo10g02049 187 FunFam Transcription factor bHLH162 5 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02049 Pumo-Chr10 27556231 27557933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02049 7 182 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 33.871 4.35e-25 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo10g02049 HLH 1.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02049 - - gmx:100809363 328.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01398 4 17764003 17765332 Pumo10g02049 10 27556231 27557933 ECH
Pumo10g02049 10 27556231 27557933 Pumo10g02049 10 27556231 27557933 ECH
Pumo4g01398 4 17764003 17765332 Pumo10g02049 10 27556231 27557933 PCT