Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02047 ATGGCCATCAGAGGCGTCAATTTCAAATGGTTTGTCCCAATCTTTCTTCCTTCATTGCTTTTTGAACCTCCGATTGTATCCCAATTTGACATGCAAATCACGCTCCTCGCAGAGCTATTGTGGCAATTAATTGGAAACGGTACCAATCTTGTACACACCCTTTGCACATATGGACTGTGGTGGGTTCCTTATATTAACGATATTGCTATTTTTCTTTTCTTGATAAGATGTAAGGTTGACTACGCCACTGTTTTCACTTTCCGGCTTTTGATGTTTGTTGATAACGGGCTTGCTTCGGGAATGGGTTTAGTTCATTTCTCTGAAATTTACTTGACTGCCAAGTGGCAACACTCGAGTTCAAGATCATTCATGTCACAACTGACTTCTTTGATTGCATCAATAAAACTTAACGTAATGGTTCTGTTGCTTGGAGGGGGTCAGAAATGGGGCTTCCTTATCTGGTTACTTTTTAGCTACTGTGGACTCCTTTGTATTGCTTGCTTGGCAATGGGGAAGTGGTTGAAACGAAGACAAGCACGCATGTTAGGTGCTCAAGAGGGTATCCCTGTATCTGCATTTGGGGTTCTAGTTGAAATGATCCGAGTACCTGATTGGGCATTTGAAGCTGCAGCAGGTCAAGAAACAAGGAGCATGGCCCAAGATGCTGCATATCATCCTGGACTTTACCTAACTCCAGCCCAGAGAGAAGCAGTTGAAGCTTTAATTCAGGAACTCCCATCGTTCAGGTTAACTGCTGTTCCTACTAATTGCAGTGAATGCCTCATCTGCTTAGAAGAGTTCCATGTAGGAAATCAGGTCCGTGGCCTGCCCTGTGCTCACAATTTTCATGTTGAATGCATTGATGAGTGGCTTCGGCTTAATGTGAATTGTCCTCGGTGCCGTTGCTCAGTATTTCCTAACCTTGATCTTAGTGCTCTGTCCAATATCCGTACTGAGTCTGAACAGTCTTCTGCCAATGCTGTGACAAGCAGACATATGACAGGCCAAACTTCTAGTCAGAGTTACCTTTTGAGATTACAGGGGCTTCTCCACCCAGTATGTGTTGAAATTGCAGGGCCAGCTGGTGAGACAGACAATGCTTTGGAAAATGCTGAAAATGGTGTTGTACTTGTTGTGACTCAAAATATGTCAACTAGAGATCAGGCCACTTCTGGTGAAACACATGCCTGTTAG 1194 0.438 MAIRGVNFKWFVPIFLPSLLFEPPIVSQFDMQITLLAELLWQLIGNGTNLVHTLCTYGLWWVPYINDIAIFLFLIRCKVDYATVFTFRLLMFVDNGLASGMGLVHFSEIYLTAKWQHSSSRSFMSQLTSLIASIKLNVMVLLLGGGQKWGFLIWLLFSYCGLLCIACLAMGKWLKRRQARMLGAQEGIPVSAFGVLVEMIRVPDWAFEAAAGQETRSMAQDAAYHPGLYLTPAQREAVEALIQELPSFRLTAVPTNCSECLICLEEFHVGNQVRGLPCAHNFHVECIDEWLRLNVNCPRCRCSVFPNLDLSALSNIRTESEQSSANAVTSRHMTGQTSSQSYLLRLQGLLHPVCVEIAGPAGETDNALENAENGVVLVVTQNMSTRDQATSGETHAC 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02047 397 ProSiteProfiles Zinc finger RING-type profile. 260 301 IPR001841 -
Pumo10g02047 397 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 103 IPR044793 GO:0004842|GO:0010182
Pumo10g02047 397 SUPERFAMILY RING/U-box 242 309 - -
Pumo10g02047 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 229 306 IPR013083 -
Pumo10g02047 397 Pfam Ring finger domain 259 301 IPR001841 -
Pumo10g02047 397 SMART ring_2 260 300 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02047 Pumo-Chr10 27497363 27501357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02047 91 384 C3H Transcription Factor Family AT3G47990 59.283 9.53e-119 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02047 K16284 - gmx:100786854 538.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g02047 10 27497363 27501357 Pumo10g02047 10 27497363 27501357 ECH
Pumo4g01402 4 17798120 17805697 Pumo10g02047 10 27497363 27501357 PCT