Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02025 ATGGATCTTGAGACAATGCTCAAAGAAACCTATGTCTCACAGCCAATAATGCATTTACAAGAAAGCTGCTTGCAACCTAGCATGAAACATGTGCTTCCTTTTGGGAACCTTTCATCTCATGGATTATTGCAAGATTTTCACCAAATTGATCAATTTCACGTGAATGTCTCCTCATCATCCAATCCAATCCATTCCCCAAATTTTGATGCTTTTGACAATTTCACCTTCACAGGTTCATCACCTGATTTTGATGCTTATGAGTGCAAGCCTTTTGTGGAGAATAACATTAGCGGGCATGCGCATGTTATGGACAATTTCTTATATGGAAATTATAGCTTGAACCTCCCTCAAAGGAATCAACAACTTGATATGATGGTTGCAAATCAAACTTTTTTGCCTTTTAATCCTCAAGAAATCAAGCCCTCCAATTTTGTTGTACCAGATGAAGTTTCATGCATATCCCCGGTGAATTATTACAAAAGAGTTGGCGTGAACAAAAATAATAAATCCTATTCCACCACTAGAAGAACATACAAAGTTCGCAAGAAGTCCAACATAGTAAAGGGGCAGTGGACAATAGAAGAAGATGGGTTGTTAATTCAACTGGTGGAACAATATGGATTGAGGAAGTGGTCTCATATTGCTAAGATATTGCCCGGAAGAATTGGAAAACAGTGCAGAGAGAGATGGCATAATCATTTAAGGCCTGACATTAAGAAGGACACATGGACTGATGAAGAGGATAAAGTACTAATCGAAGCTCATGCTGGGATAGGAAACAAATGGGCAGAGATTGCTAAAAGGTTGCCAGGAAGAACTGAGAACTCAATAAAAAACCATTGGAATGCAACCAAGAGAAGGCAATATTCCAAAAGAAAGTGTCGCTCAAAGTACCCTAGAGGCACTCTTCTGCAAGACTATATCAAGAGCTTGAACTTGGACAAGAACCCCCCAAGAGATTATAGGAGAAAATCTAATGCCAATTATGCTACTGCCATGAGTAACAAAACCAGCACAAGCAAATTAGTCACTGCACCAGCATTTCAATTTTGTGCTGCCACTGATTGTTCATTGGCACCAAATTATGATTTTAATGTGGTCCCAGATTTCTTCTTTGGTGAGAATTTGTTTGAAGAAGGGTGTAGCATTGATTCTCTTCTAGATGATGTGCCTGCTTGTGCTCCTCTTATGGGTAAGAAAGATTTTGAAGGAAAATTATTGCAATGTGATGATCGTACAATGGAGGGAATGAAGTGTGCTCCTTTTGTTAATATCGATGAGAATGATCATGTTGAGACAGAGATGCCACTAGAGATGTTGGAGGTTGAAGTTAAGAAGGAGCTGGATTTGGTTGAGATGATGTCTCAGATTAATAGTGAAATTGTTCATGTGTGA 1395 0.3892 MDLETMLKETYVSQPIMHLQESCLQPSMKHVLPFGNLSSHGLLQDFHQIDQFHVNVSSSSNPIHSPNFDAFDNFTFTGSSPDFDAYECKPFVENNISGHAHVMDNFLYGNYSLNLPQRNQQLDMMVANQTFLPFNPQEIKPSNFVVPDEVSCISPVNYYKRVGVNKNNKSYSTTRRTYKVRKKSNIVKGQWTIEEDGLLIQLVEQYGLRKWSHIAKILPGRIGKQCRERWHNHLRPDIKKDTWTDEEDKVLIEAHAGIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRGTLLQDYIKSLNLDKNPPRDYRRKSNANYATAMSNKTSTSKLVTAPAFQFCAATDCSLAPNYDFNVVPDFFFGENLFEEGCSIDSLLDDVPACAPLMGKKDFEGKLLQCDDRTMEGMKCAPFVNIDENDHVETEMPLEMLEVEVKKELDLVEMMSQINSEIVHV 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02025 464 SMART sant 239 287 IPR001005 -
Pumo10g02025 464 SMART sant 187 236 IPR001005 -
Pumo10g02025 464 Gene3D - 187 239 - -
Pumo10g02025 464 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 239 289 IPR017930 -
Pumo10g02025 464 CDD SANT 242 285 IPR001005 -
Pumo10g02025 464 ProSiteProfiles Myb-like domain profile. 183 234 IPR001005 -
Pumo10g02025 464 CDD SANT 191 234 IPR001005 -
Pumo10g02025 464 Gene3D - 241 302 - -
Pumo10g02025 464 FunFam Transcription factor MYB119 241 305 - -
Pumo10g02025 464 FunFam Transcriptional activator Myb isoform A 187 240 - -
Pumo10g02025 464 ProSiteProfiles Myb-like domain profile. 235 285 IPR001005 -
Pumo10g02025 464 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 183 238 IPR017930 -
Pumo10g02025 464 PANTHER MYB PROTEIN-RELATED 168 328 - -
Pumo10g02025 464 SUPERFAMILY Homeodomain-like 185 281 IPR009057 -
Pumo10g02025 464 Pfam Myb-like DNA-binding domain 191 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02025 Pumo-Chr10 26848643 26851138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02025 84 391 MYB Transcription Factor Family AT4G18770 52.395 3.32e-100 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo10g02025 Myb_DNA-bind_6 6.2e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02025 K09422 - gmx:102662267 766.533