Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02011 ATGTTTCAAAAGTGCTTCGTGCTAAAGTTGCTTCTCATCCTCTATTTCCTCACCTTCCTCCATGCCTACATCGATTGCCACGAGATGGGAGCGCCGCAAGATGTGGCACACCTATTAGAAGGAATCAAAGGAGAGCATACTACTGGGGTGTGTCAGATATCTGAATCTGAAGGCTTCTTGGGTGCTGATCCCGAGCTTGATGATTTCATGGGAACGTTTTGCGATTTATTGGTGAAGTACAAATCGGATCTTTCAAGGCAATTTAACGAGGCAACCATGTTCCTCAGCCACATGGAAACTCAGCTTCACTCCATCTGCAAAACTCCTCCTCAACCTGATGCAGTTACTGGATCACCTGGAAAAGATGTTAGTAGCAGGGTGGAGAAAAAGGCAATTGAGGGCAAGAGGATGAATGAAGTTCAAGAGCTGAAGGATAACCTTCTACATAGATATAGCGGTTATATTACTAATCTGAAGCATGAATTTTCCAAAAAGAAGAAGAAAGAAAAGCTACCAAAAGAAGCAAAGCAGATCTTACTTGCATGGTGGAATATTCACTTTAAATGGCCATACCCAACGGACGCGGATAAGGTTGCCTTAGCTGAATGGACTGGTTTAGACCAGAAACAAGTAAATAATTGGTTTATAAACCAAAGGAAGCGCCATTGGAAACCAACAGAGGAAATGCACGCTGCAATTTTGGATGGTCTCTATGGATCCCTGCACGAGTGA 732 0.4331 MFQKCFVLKLLLILYFLTFLHAYIDCHEMGAPQDVAHLLEGIKGEHTTGVCQISESEGFLGADPELDDFMGTFCDLLVKYKSDLSRQFNEATMFLSHMETQLHSICKTPPQPDAVTGSPGKDVSSRVEKKAIEGKRMNEVQELKDNLLHRYSGYITNLKHEFSKKKKKEKLPKEAKQILLAWWNIHFKWPYPTDADKVALAEWTGLDQKQVNNWFINQRKRHWKPTEEMHAAILDGLYGSLHE 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02011 243 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 55 232 - -
Pumo10g02011 243 Pfam KNOX2 domain 61 106 IPR005541 GO:0003677|GO:0005634
Pumo10g02011 243 Pfam Homeobox KN domain 182 221 IPR008422 GO:0003677|GO:0006355
Pumo10g02011 243 SUPERFAMILY Homeodomain-like 163 234 IPR009057 -
Pumo10g02011 243 SMART ELK_2 142 163 IPR005539 GO:0003677
Pumo10g02011 243 SMART HOX_1 164 229 IPR001356 GO:0003677
Pumo10g02011 243 ProSiteProfiles 'Homeobox' domain profile. 162 225 IPR001356 GO:0003677
Pumo10g02011 243 SMART KNOX2_2 56 107 IPR005541 GO:0003677|GO:0005634
Pumo10g02011 243 Gene3D - 159 233 - -
Pumo10g02011 243 ProSitePatterns 'Homeobox' domain signature. 200 223 IPR017970 GO:0000981|GO:0006355
Pumo10g02011 243 Pfam ELK domain 142 163 IPR005539 GO:0003677
Pumo10g02011 243 CDD homeodomain 177 225 IPR001356 GO:0003677
Pumo10g02011 243 ProSiteProfiles ELK domain profile. 142 162 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02011 Pumo-Chr10 26519956 26529556 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02011 19 241 Homeobox Transcription Factor Family AT1G23380 52.402 2.14e-74 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pumo10g02011 KNOX2 7.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02011 - - gmx:102662019 404.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g02011 10 26519956 26529556 Pumo10g02011 10 26519956 26529556 ECH