Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02002 ATGGGTCCTATCAACATAAAGGGAGAAATAGAGAGAGTGAATGGGAAGGAACTGAGTTACAGTGAATTTATGAAGAGATATATGGAGAAGAACCAGCCAGTGGTGCTCACTGGGCTAATGGACCCTCATCATTGGAGGGCTTCCACTGATTGGGTCACACTTCAGGGCCAACCCAACTTTCAATTTTTCTCCACTCATTTTGGTGGTTCTAAAGTTCAGGTTGCTGATTGTGACACCAGAGAATTCACTGATCAGAAAAGAGAGGAGATGTTGCTATCAGATTTTATAGCACGTTGCCTTCAACTTCAGGAGGCTTCAGCTGTTCAGTGTAATAATGAAAATTGTGCAAGTAATGGTCCCTCTGCATCTGTACCGTATTTGAAGGATTGGCATTTTGTAAAGGAGTATCCTGAATATTTAGCATACATCACTCCAATGTTCTTTTGTGATGACTGGCTCAACCTGTATCTTGACAACTTCAGAATCCATATTGATTCTGACACACAACAACCAAATGAGGAAATATGTTGCTCTGACTATCGATTTGTTTACATGGGGGTGAAAGGATCTTGGACTCCTCTTCATGCTGATGTTTTCAGATCCTATAGCTGGTCAGCAAATGTCTGTGGAAAGAAGAGATGGCTTTTTCTAGATCCTTCCCAGTGTCATCTTGTATTTGACAGGAATATGAAAAATTGTGTATATAATATCTTTGGTGAAGTATCAAACTCAAAGTTTCCTGGTTTTAGCAAGGCTATCTGGTTTGAATGCACACAAGATGCAGGTGAAATTATATTTGTTCCCAGCGGATGGTATCATCAAGTTCATAATTTGGAGGATACGATATCTATAAACCACAATTGGTTCAATGCCTATAACCTTTCTTGGGTGTGGAATTTACTTTTAAGGGACTACAATGAGGCCAAGGAATACATAGAAGACATCAAGGATATATGTGATGATTTTGAAGGGCTCTGCCAGCGCAATCTTGCTGCTAACACAGGGATGAATTTTTATGACTTCTTTACTTTCATGTCATACTTCACCTTGGCCAACTTGGTGTTGCTTCGTTATATAAATAGAAGATATGGAAGTACCACTGGAAGTTCATCAACAATAGCTCAGCATTTATCCATGAATCTTGGGTGTTTAAGGAAGATTGCATCGGAGATGAAACGTGTGCGTGCTCTAGAAGGAAATCATGATTGCGTTGTGGATATTATCAAAGCATTTGAAGATCCTAGGTTTTCAAAATTATGCATGCATGTAGGAAGAACATATATAATGATTCATGAGCAATCTTACTTGTCCTCGGATTTTGAGAGCACTTCAATGTGTGATTTGGTGGACCTCAATGATATGAAATCATACACATCTCATATTTACACACCTGAAGATCTCATTAAATTTATAGACAATGGTGTTGCAGAACTGGGTGACTGTTTCATTGAGGAGCAACCTATACTCCATGTTGCTTGA 1479 0.3908 MGPINIKGEIERVNGKELSYSEFMKRYMEKNQPVVLTGLMDPHHWRASTDWVTLQGQPNFQFFSTHFGGSKVQVADCDTREFTDQKREEMLLSDFIARCLQLQEASAVQCNNENCASNGPSASVPYLKDWHFVKEYPEYLAYITPMFFCDDWLNLYLDNFRIHIDSDTQQPNEEICCSDYRFVYMGVKGSWTPLHADVFRSYSWSANVCGKKRWLFLDPSQCHLVFDRNMKNCVYNIFGEVSNSKFPGFSKAIWFECTQDAGEIIFVPSGWYHQVHNLEDTISINHNWFNAYNLSWVWNLLLRDYNEAKEYIEDIKDICDDFEGLCQRNLAANTGMNFYDFFTFMSYFTLANLVLLRYINRRYGSTTGSSSTIAQHLSMNLGCLRKIASEMKRVRALEGNHDCVVDIIKAFEDPRFSKLCMHVGRTYIMIHEQSYLSSDFESTSMCDLVDLNDMKSYTSHIYTPEDLIKFIDNGVAELGDCFIEEQPILHVA 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02002 492 SUPERFAMILY Clavaminate synthase-like 7 317 - -
Pumo10g02002 492 Gene3D Cupin 1 289 - -
Pumo10g02002 492 Pfam Cupin-like domain 21 288 IPR041667 -
Pumo10g02002 492 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 11 342 - -
Pumo10g02002 492 ProSiteProfiles JmjC domain profile. 133 305 IPR003347 -
Pumo10g02002 492 SMART cupin_9 125 305 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02002 Pumo-Chr10 26388403 26393477 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02002 8 297 Glycosyltransferase AT1G78280 25.667 1.98e-17 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pumo10g02002 Cupin_8 3.3e-22 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02002 - - gmx:100803814 967.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g02002 10 26388403 26393477 Pumo10g02002 10 26388403 26393477 ECH