Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02000 ATGCCTGTAATAAATTCATGGACCCTTTTCTTCTTATACACCACTCTTTTATTATTCCCATACAATTCTTTCTTAGCTACTATTGCAGTTAACCAACAAGGCCAAGCTCTCCTTTCATGGAAGAGAACCCTGAATGGATCCCTCCGAGCATTGAACAACTGGGACCCAAATGATGAAACACCATGCGAGTGGTTCGGCGTGAGTTGCAACAAAGAGGACGAAGTTGTGGAGTTAGATCTGAGACACGTTGTTTTGCTCGGAAAACTCTTTTCCAATTTCACCTCATTCCCTTCATTGAACACACTCACATTAACGGGAACCAACCTCACAGGTTCAATCCCAAGGGAGATAGCTTCTTTAACTAACCTCACCTACTTGGACTTAAGCCACAATGCGTTCAGCGGCGCAATCCCAAGTGAACTCTGCCACTTGAATAAGCTGAAGCAACTGCACCTGAACTCCAACAACCTGGTTCGGTCCATTCCAGTTGCAATCGGTAATCTCACCAACTTAGAGTGGTTAGTCTTATATGATAATTTATTAAGTGGTGAAATTCCCAGCACCATAGGGAACCTGAGGAACCTGAAAGTTATAAGAGCTGGTGGGAACAAGAACTTAAATGGTGATTTACCACAAGAAATTGGTAACTGCACCAATTTAGAGATACTAGGCCTTGCTGAAACAACCATTTCTGGTTCTCTACCTCCAACACTAGGACTCTTAAAGAACCTACACACCATTGCACTATACAGCACTTCCTTTCTCAATGGCCAAATTCCAAAAGAACTCGGTAACTGCACCGAACTCCGAAACGTTTATCTCTACGAGAACTCCCTCACGGGTCCCATACCGAACACGTTGGGAAACCTTAAGAACCTGAAAAACCTACTGCTGTGGCGGAACAACCTCGTTGGAACGATCCCAACGGAGATAGGAAGGTGTAACGAACTAACGGTCGTTGACGCCTCCATGAACACGCTAACGGGGAGCATTCCGGAGAGTATGGGAAACTTGACGGCGTTAGAGGAACTGCAACTCGGTGTTAACGGGATTTCAGGGGAGATTCCGTGGGAGTTAGGGAAGTGTTCAAAACTCACTCACGTGGTGCTTGACAATAACGAAATAACGGGAAAGATACCTTCGGAATTCGGAAACCTGAAGAACCTAACGCTGTTGTTCCTGTGGCACAACAAGATCCACGGTTCTATACCGTCCACGCTTTCGAAATGCGAAAACCTTGAAGCGTTGGATCTCTCGCAGAACAATTTCACTGGTTCTATACCTGAGGGAATATTCCAGCTCAGAAAACTGAACAAGCTTTTGCTTCTATCAAACGCTCTCTCTGGAAAATTACCTTCGGAGATTGGTAATTGTTCTTCTCTGATTCGTTTCAGAGCGAGTAACAATAGCATCACCGGGAATATTCCCTCGCAGATAGGGAATCTCGCGAATTTGAATTTCTTGGACCTCGGAAACAACCGCATCACCGGAAATATTCCCGACGAAATCTCCGGCTGCCGGAATCTCACGTTTCTCGACCTGCATTCCAATTCCATCGCCGGAACCCTACCGGAGAGTCTTGGAAAACTTAATTCCCTTCAATTTATCGATATCTCCGATAATAATCTACAAGGCACGCTTAGTCCCAGCGTAGGGTTTCTTACCTCTCTCAATAAATTTGTTTTGAGGAAGAATTGTATCTCCGGGTCAATACCGAGTCAACTCGGTTCCTGCTCGAAGCTGCAGTTACTGGACCTCAGCAGCAACCGAATCTCCGGGAATATTCCAGGGAGTTTAGGGAATATTCCGTCGATGGAGATAGCTCTGAATCTAAGCTTGAACCAACTCTCCGGTGAGATTCCTAAGGAGTTTTCGTCGTTGGTAAAACTCGCCGTTTTGGATATTTCTCATAATCATCTCAGCGGTGAGCTTCGGTATCTCGTTGGGCTGCAAAATCTCGTCGTGTTGAATATCTCGTATAACGAGTTCTCGGGGCGCGTTCCGGAGACTCCTTTCTTCGCGAAGCTTCCGGTGAGCGTGCTGGAGGGGAACCCGGCGCTGCGGCTGTCGGCCGTCGACGGAGGATCGCGGCGGGGAGAGAAGGCTGCGCGCGCGGCCTTCGCGGTCCTGCTGTGCGTCGCGGCGTGCGCGCTCCTCGTGGCGGCGCTGTGCGTCGTCGCCGCAGCGAAACGACACGAGGGGAGCAAAAACGACGTTAACGGGACCGACGCAGACGTGGACATGGCCCCGCCTTGGAAAGTGACGCTTTACCTGAAACTCGACCTGTCCATAGCTGACGTGGCAAAATGCCTGACAGCTGGCAATGTCGTTGGGAGAGGACGAACCGGCGTCGTTTACAGAGTGGAAACGCCTTCGGGCTTAACCGTGGCGGTGAAGAGGTTTAAGTCAAGGGAGAAATTCTCCGCGGCGGCGTTCGCGGCGGAGATCGCGACGCTGGCGAGAATCCGGCACCGGAATATTGTGCGGCTGTTGGGTTGGGCGGAGAACCGGAAAACAAAGTTACTATTCTATGATTACTTAGCGGGTGGGAATTTGGACGCGCTGTTGCACGAGGGGTGCGCAGGATTAGTGGAGTGGGAGACGCGGCTCAAGATAGCAGTGGGCGTGGCGGAGGGTCTGGCCTACTTGCACCACGATTGCGTCCCTGCTATCCTGCACCGGGACGTGAAGGCGCACAATATTTTACTTGGAGACAGGTATGAACCGTGTTTGGCCGATTTTGGACTCGCTCGGTTAGTGGAAGAGGATCACAGTTCTTTTTCCATGAACCCCCAATTCGCGGGTTCTTACGGCTACATTGCTCCTGAGTATGCATGCATGCTGAAGATCACAGAGAAGAGTGATGTGTACAGTTTTGGGGTGGTCCTACTGGAGATAGTAACTGGAAAGAGGCCAGTACTGGATGCATCATTTCCGGAGGGACAACAACATGTTGTGCAGTGGGTGAGAGAGGAGCTGAAGAGGAAGAAGGACCCGGCTGAGGTTGTGGACCAGAGGCTTCAGGGGCGTCCAGACAGGGAGATACAAGAGATGCTGCAAGCACTTGGCATCTGTCTCTTGTGCACCAATACTCGCGCGGAGGATCGACCCACCATGAGCCACGTGGCTGCATTATTGAGAGAGATTCGACATGACCCTCCAGCAGGGTCTGAGCCCCAGCCCCACCACCACAAGGGTGCTGCTACTGCTACCACCAACTGCACCAAAACAACCTCTTTTTCGTCCTCTTCGGTGACCCCGGCTCAGTTGTTGCTACTCCAATCCTCTTCTCGTTCCTCATCACTTGCTTATTCATCTTCCTCAGCTGTGGCCTACCCACCACCCCAACAGGGAATGGACCATGAATCTTGTTAA 3375 0.5022 MPVINSWTLFFLYTTLLLFPYNSFLATIAVNQQGQALLSWKRTLNGSLRALNNWDPNDETPCEWFGVSCNKEDEVVELDLRHVVLLGKLFSNFTSFPSLNTLTLTGTNLTGSIPREIASLTNLTYLDLSHNAFSGAIPSELCHLNKLKQLHLNSNNLVRSIPVAIGNLTNLEWLVLYDNLLSGEIPSTIGNLRNLKVIRAGGNKNLNGDLPQEIGNCTNLEILGLAETTISGSLPPTLGLLKNLHTIALYSTSFLNGQIPKELGNCTELRNVYLYENSLTGPIPNTLGNLKNLKNLLLWRNNLVGTIPTEIGRCNELTVVDASMNTLTGSIPESMGNLTALEELQLGVNGISGEIPWELGKCSKLTHVVLDNNEITGKIPSEFGNLKNLTLLFLWHNKIHGSIPSTLSKCENLEALDLSQNNFTGSIPEGIFQLRKLNKLLLLSNALSGKLPSEIGNCSSLIRFRASNNSITGNIPSQIGNLANLNFLDLGNNRITGNIPDEISGCRNLTFLDLHSNSIAGTLPESLGKLNSLQFIDISDNNLQGTLSPSVGFLTSLNKFVLRKNCISGSIPSQLGSCSKLQLLDLSSNRISGNIPGSLGNIPSMEIALNLSLNQLSGEIPKEFSSLVKLAVLDISHNHLSGELRYLVGLQNLVVLNISYNEFSGRVPETPFFAKLPVSVLEGNPALRLSAVDGGSRRGEKAARAAFAVLLCVAACALLVAALCVVAAAKRHEGSKNDVNGTDADVDMAPPWKVTLYLKLDLSIADVAKCLTAGNVVGRGRTGVVYRVETPSGLTVAVKRFKSREKFSAAAFAAEIATLARIRHRNIVRLLGWAENRKTKLLFYDYLAGGNLDALLHEGCAGLVEWETRLKIAVGVAEGLAYLHHDCVPAILHRDVKAHNILLGDRYEPCLADFGLARLVEEDHSSFSMNPQFAGSYGYIAPEYACMLKITEKSDVYSFGVVLLEIVTGKRPVLDASFPEGQQHVVQWVREELKRKKDPAEVVDQRLQGRPDREIQEMLQALGICLLCTNTRAEDRPTMSHVAALLREIRHDPPAGSEPQPHHHKGAATATTNCTKTTSFSSSSVTPAQLLLLQSSSRSSSLAYSSSSAVAYPPPQQGMDHESC 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02000 1124 ProSitePatterns Protein kinases ATP-binding region signature. 777 799 IPR017441 GO:0005524
Pumo10g02000 1124 SMART LRR_sd22_2 482 505 - -
Pumo10g02000 1124 SMART LRR_sd22_2 386 415 - -
Pumo10g02000 1124 SMART LRR_sd22_2 120 146 - -
Pumo10g02000 1124 SMART LRR_sd22_2 627 652 - -
Pumo10g02000 1124 SMART LRR_sd22_2 168 194 - -
Pumo10g02000 1124 SMART LRR_sd22_2 578 597 - -
Pumo10g02000 1124 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 847 1063 - -
Pumo10g02000 1124 SMART serkin_6 771 1055 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g02000 1124 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 466 1047 - -
Pumo10g02000 1124 FunFam MDIS1-interacting receptor like kinase 2 isoform A 282 383 - -
Pumo10g02000 1124 Gene3D Ribonuclease Inhibitor 433 693 IPR032675 -
Pumo10g02000 1124 Gene3D Ribonuclease Inhibitor 200 332 IPR032675 -
Pumo10g02000 1124 MobiDBLite consensus disorder prediction 1051 1070 - -
Pumo10g02000 1124 Pfam Leucine rich repeat 92 132 IPR001611 GO:0005515
Pumo10g02000 1124 Pfam Leucine rich repeat 467 519 IPR001611 GO:0005515
Pumo10g02000 1124 Pfam Leucine rich repeat 364 423 IPR001611 GO:0005515
Pumo10g02000 1124 FunFam Nuclear pore complex protein NUP107 30 186 - -
Pumo10g02000 1124 MobiDBLite consensus disorder prediction 1103 1124 - -
Pumo10g02000 1124 SMART LRR_typ_2 507 530 IPR003591 -
Pumo10g02000 1124 SMART LRR_typ_2 482 506 IPR003591 -
Pumo10g02000 1124 SMART LRR_typ_2 386 410 IPR003591 -
Pumo10g02000 1124 SMART LRR_typ_2 290 314 IPR003591 -
Pumo10g02000 1124 SMART LRR_typ_2 411 434 IPR003591 -
Pumo10g02000 1124 SMART LRR_typ_2 168 192 IPR003591 -
Pumo10g02000 1124 SMART LRR_typ_2 627 650 IPR003591 -
Pumo10g02000 1124 SMART LRR_typ_2 120 143 IPR003591 -
Pumo10g02000 1124 SMART LRR_typ_2 554 578 IPR003591 -
Pumo10g02000 1124 SMART LRR_typ_2 144 167 IPR003591 -
Pumo10g02000 1124 ProSitePatterns Serine/Threonine protein kinases active-site signature. 891 903 IPR008271 GO:0004672|GO:0006468
Pumo10g02000 1124 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 187 281 - -
Pumo10g02000 1124 Gene3D Transferase(Phosphotransferase) domain 1 847 1065 - -
Pumo10g02000 1124 Pfam Protein kinase domain 774 1042 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g02000 1124 SUPERFAMILY RNI-like 61 308 - -
Pumo10g02000 1124 ProSiteProfiles Protein kinase domain profile. 771 1046 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g02000 1124 Gene3D Phosphorylase Kinase; domain 1 753 846 - -
Pumo10g02000 1124 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 412 696 - -
Pumo10g02000 1124 ProSiteProfiles Leucine-rich repeat profile. 412 434 IPR001611 GO:0005515
Pumo10g02000 1124 ProSiteProfiles Leucine-rich repeat profile. 484 506 IPR001611 GO:0005515
Pumo10g02000 1124 Gene3D Ribonuclease Inhibitor 333 430 IPR032675 -
Pumo10g02000 1124 SUPERFAMILY Protein kinase-like (PK-like) 760 1048 IPR011009 -
Pumo10g02000 1124 Gene3D Ribonuclease Inhibitor 29 189 IPR032675 -
Pumo10g02000 1124 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Pumo10g02000 1124 SUPERFAMILY RNI-like 272 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02000 Pumo-Chr10 26370495 26374625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02000 28 1109 Receptor kinase-like Gene Family AT5G56040 52.194 0.0 1062
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pumo10g02000 Pkinase 3.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02000 - - gmx:100778064 1521.14