Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01988 ATGGCATCATCCAGCTCCTACAACTCTCCATGTGCTGCTTGCAAATTCTTGAGGAGGAAGTGCCTTCCAGGGTGCATCTTTGCACCTTACTTTCCACCAGAAGAGCCTCAAAAATTCGCGAACGTGCACAAGATCTTCGGTGCCAGCAATGTGACCAAGCTCCTCAACGAGCTTCTTCCTCATCAGAGGGAAGATGCAGTGAACTCCCTCGCCTATGAAGCCGAGGCACGCGTCAGAGACCCCGTCTATGGCTGCGTTGGTGCCATCTCCTTCCTCCAGAGACAGGTTCAAAGGCTCCAAAAAGAGCTTGATTCTGCAAATGCTGATCTTCTTCGCTATGCCTGCAATGACATGCCTCAACCCTCTCTTTCTGTGCCACCAACAAATGAAATTATTCCACAAATGCCCCAGAGGTCCTTCAGTGCAAGGTTTGGAAATGAAGCAAGTGGGTTCTATAGGCCTTCTCCTACCTCCACCACCACCACCACTTACTCTTCTTTCCCTTATTCTCTTCCATGGACTGATACCCCTCCTGAGGATATCAATGATGGAGGAGGAGAAGGAGGAGGTAACTTGTGA 579 0.4991 MASSSSYNSPCAACKFLRRKCLPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDSANADLLRYACNDMPQPSLSVPPTNEIIPQMPQRSFSARFGNEASGFYRPSPTSTTTTTYSSFPYSLPWTDTPPEDINDGGGEGGGNL 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01988 192 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Pumo10g01988 192 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Pumo10g01988 192 MobiDBLite consensus disorder prediction 151 192 - -
Pumo10g01988 192 Coils Coil 89 116 - -
Pumo10g01988 192 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 130 - -
Pumo10g01988 192 MobiDBLite consensus disorder prediction 151 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01988 Pumo-Chr10 26254255 26254898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01988 1 192 AS2 family AT5G63090 57.798 5.63e-75 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo10g01988 LOB 5.5e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01988 - - gmx:100799774 310.071