Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01980 ATGGAATCCAAACCCAATCAAACTATCAAGCTCCTCTGTAGCTACGGCGGTAAGATTCTCCCACGCGCCACTGACGGCGAACTCCGTTACGTCGGCGGCCACACCAGAGTCCTCACCGTCGACCGTTCTATTTCCTTTTCAGAATTGATGGTGAAGCTTAGCGAGTTTTGTGGTGCGTCTGTGATCTTGCGGTGTCAATTGCCCAAGGGAGACTTGGAGACCTTGATCTCCATCACCAACGACGAAGATCTCGCTAGTATAATCGAAGAATACGATCGTGCCTCGTTGAAATTGGCGCATCCGTTGAAGATCAAAGCCGTTCTCTCGCGGCCGAGATCGATGAAGAAGGTTTCGTCTGCTCCGTCGTCGTCGTCAGCGTCGTCGAGCGCCGGTCACTCTCCGTCCAGATCGCCACACACCTCCACCGAATCGCTGCCGTACGCGGCGTACTACCGCATCGGCCGCCACAACCGGCCGCCGCCGCCGCCGGTTGCGTATGCTATCGGCGCTCGTAACGGCTCGGTGAAGGCTTGTTGCTACACGCAGTTCGATGGAAGCCCTAGGTTTCTGTATCGTGGACCTCACTGCAATTATTACTGTCACTGA 606 0.5561 MESKPNQTIKLLCSYGGKILPRATDGELRYVGGHTRVLTVDRSISFSELMVKLSEFCGASVILRCQLPKGDLETLISITNDEDLASIIEEYDRASLKLAHPLKIKAVLSRPRSMKKVSSAPSSSSASSSAGHSPSRSPHTSTESLPYAAYYRIGRHNRPPPPPVAYAIGARNGSVKACCYTQFDGSPRFLYRGPHCNYYCH 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01980 201 MobiDBLite consensus disorder prediction 115 142 - -
Pumo10g01980 201 PANTHER OS05G0427100 PROTEIN-RELATED 3 149 - -
Pumo10g01980 201 CDD PB1_UP2 12 99 - -
Pumo10g01980 201 Pfam PB1 domain 27 97 IPR000270 GO:0005515
Pumo10g01980 201 Gene3D - 29 110 - -
Pumo10g01980 201 SUPERFAMILY CAD & PB1 domains 25 110 - -
Pumo10g01980 201 SMART PB1_new 23 102 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01980 Pumo-Chr10 26075920 26078154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01980 1 93 MAP Kinase Kinase Kinase AT3G46920 40.860 6.53e-24 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01980 - - gmx:100810563 334.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01980 10 26075920 26078154 Pumo10g01980 10 26075920 26078154 ECH
Pumo4g01456 4 18477132 18478186 Pumo10g01980 10 26075920 26078154 PCT