Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01969 ATGGCGCGAGTCCCCGAAGCTGGTCACACTGTCTCGACGATCGACCGCCTAGTCTGCATGGGTCGGCCTATCCAGGCGGTTCAGTTCTTTGAGCGAATGGAAAGGGACTACGGGCTGAAGTGCGACCGTGGTTCCTTAAAGGTGGTTGTGGAGAAGCTATGTTCAAAGGGTTTTGCGAGTTACATAGAGAAGATGGTGAAGGATTTGGGGAGGAAGTTTTGCCTTGTGAAAAATTCTTCTGGTAAGCGTGGATATTGGGTTTTTCCCGCCCATTTTGAAAGAAAACCCTGGCTGGTTCCATTTCTCATCTTCTTCCCTCACTCCCACAAAAATGAGTGCACCAATGGAGACGGAGCTCACAACCGACCAAAACGGCGCTGCTTCCCAACACTCACCTTCCGGAGGACAAAGCTTCTTGTCCCTGTCGAGGTAACCCTAAAACCTTCCAGCACAGCTAAAATCGACGATGTTCGTTCCGCCGTTGAGGGGATGCTTGAAAAGAGGAGTTTGAGCTACATCGATGGACCCATTCCGGTGCCTCTTGATGACGCGTTTCTCGCAGATAACGTGCAAAGAATTTGTGTTTGCGGATGTGATACTGATGAAAGGATGCATAATGATAATGTTCTTTTGTTCTGGCAAGTCAAGCCTGTTGTACATGTCTTTCAGCTTAGTGAGGAAGGACCATGTGAGGATATAAGCTCTGATGGCCAGTCTTCCAGCTTCAATGAATGGATTCTTCCTGCAAAGGAATTTGATGGCATGTGGGAAAGCTTAATATATGAATCTGGTCTAAAGAAGCGGTTATTACATTATGCAGCAAGTGCTTTGCTCTTTACTGAAAAGGGGGTTGATCCATTCCTTGTTTCATGGAATCGCATAATTCTGTTACATGGACCACCTGGGACTGGAAAGACGTCTTTATGTAAAGCATTAGCTCAGAAATTATCAATTCGATTCAATTCGAGATACCCACAGGCCCAGCTTGTTGAAGTGAATGCACATTCTTTGTTCAGTAAATGGTTCTCCGAAAGTGGCAAGCTGGTAGCAAAACTTTTCCAAAAGATTCAAGAAATGGTAGAGGAAGAAAGCAATCTAGTATTTGTATTGATTGATGAAGTCGAGAGCCTTGCTGCTGCTAGAAAAGCTGCTTTATCTGGTTCTGAACCTTCTGATTCTATTCGGGTTGTCAATGCATTACTAACTCAGATGGACAAGTTAAAATCATCTCCAAATGTGATAATTCTAACCACGTCCTAA 1260 0.4476 MARVPEAGHTVSTIDRLVCMGRPIQAVQFFERMERDYGLKCDRGSLKVVVEKLCSKGFASYIEKMVKDLGRKFCLVKNSSGKRGYWVFPAHFERKPWLVPFLIFFPHSHKNECTNGDGAHNRPKRRCFPTLTFRRTKLLVPVEVTLKPSSTAKIDDVRSAVEGMLEKRSLSYIDGPIPVPLDDAFLADNVQRICVCGCDTDERMHNDNVLLFWQVKPVVHVFQLSEEGPCEDISSDGQSSSFNEWILPAKEFDGMWESLIYESGLKKRLLHYAASALLFTEKGVDPFLVSWNRIILLHGPPGTGKTSLCKALAQKLSIRFNSRYPQAQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEESNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTS 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01969 419 CDD RecA-like_Pch2-like 241 419 - -
Pumo10g01969 419 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 247 418 IPR027417 -
Pumo10g01969 419 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 133 419 IPR044539 -
Pumo10g01969 419 Pfam ATPase family associated with various cellular activities (AAA) 295 418 IPR003959 GO:0005524|GO:0016887
Pumo10g01969 419 FunFam pachytene checkpoint protein 2 homolog 235 419 - -
Pumo10g01969 419 SMART AAA_5 291 400 IPR003593 GO:0016887
Pumo10g01969 419 Gene3D - 247 419 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01969 Pumo-Chr10 25984873 25991060 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01969 240 419 Calmodulin-binding Proteins AT3G56690 28.962 2.35e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01969 K22399 - gmx:100812167 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01969 10 25984873 25991060 Pumo10g01969 10 25984873 25991060 ECH