Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01966 ATGGCCCTGGCAGCCCTCGGCAACAGCGCCCCCAAGAAGTACGACGAGATTGACGCCGCCCCGGAGGAGCGCGCCCGCGGCATCACCATCAACACCGCCACGGTCGAGTACGAGACCGAGAACCGCCACTACGCCCACGTGGACTGCCCCGGCCACGCGGACTACGTCAAGAACATGATCACCGGCGCCGCCCAGATGGACGGCGCCATATTGGTGGTCTCCGGCGCTGACGGCCCCATGCCACAAACCAAGGAACACATCCTCTTAGCCAAGCAAGTCGGAGTCCCCAACATGGTGGTGTTCCTGAACAAACAAGACCAAGTCGACGACGAAGAGCTCCTCCAGCTCGTCGACCTCGAGGTCCGCGACCTTCTCAACTCCTACGAGTTCCCTGGAGACGACACTCCCATCGTCTCGGGTTCCGCGCTCTTAGCCCTAGAAGCTCTGATGGCCAACCCCGCCATCAAGCGCGGGGACAACGAGTGGGTTGACAAAATCTATCAACTCATGGACGAAGTCGACAGCTACATTCCCATCCCCCAGCGCCAGACCGACCTCCCCTTCCTCCTGGCCGTCGAAGACGTCTTCTCCATCACCGGACGTGGAACCGTCGCCACCGGCCGCGTCGAGCGTGGCACTATCAAAGTCGGGGAAACGGTTGACCTTGTAGGTTTGCGGGAAACAAGAAACACCACCGTCACCGGCGTGGAGATGTTCCAGAAGATTCTGGATGAAGCCCTGGCCGGGGACAACGTAGGGCTGCTGCTCAGAGGGATTCAGAAGACGGACATTCAGAGAGGGATGGTGTTGGCGAAGCCCGGGACGATTACGCCGCACACGAAGTTTACGGCGATTGTTTATGTTTTGAAGAAGGAGGAAGGTGGGAGGCACTCGCCGTTTTTTGCAGGGTATAGGCCTCAGTTTTACATGAGGACCACCGATGTAACTGGGAAGGTGACTTCTATCATGAACGATAAGGACGAGGAGTCGAAGATGGTGATGCCCGGTGACCGTGTGAAGATGGTGGTCGAGCTTATTGTGCCTGTGGCTTGCGAACAGGGAATGAGGTTTGCTATTAGGGAAGGAGGGAAGACCGTTGGTGCCGGCGTTATCCAATCCATCATTGAGTGA 1131 0.5818 MALAALGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVDLEVRDLLNSYEFPGDDTPIVSGSALLALEALMANPAIKRGDNEWVDKIYQLMDEVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLRETRNTTVTGVEMFQKILDEALAGDNVGLLLRGIQKTDIQRGMVLAKPGTITPHTKFTAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAGVIQSIIE 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01966 376 Gene3D Translation factors 315 375 - -
Pumo10g01966 376 Gene3D Translation factors 183 311 - -
Pumo10g01966 376 Gene3D - 4 180 IPR027417 -
Pumo10g01966 376 CDD EFTU_II 188 274 IPR033720 -
Pumo10g01966 376 Pfam Elongation factor Tu GTP binding domain 14 178 IPR000795 GO:0003924|GO:0005525
Pumo10g01966 376 FunFam Elongation factor Tu 315 375 - -
Pumo10g01966 376 CDD EFTU_III 277 371 - -
Pumo10g01966 376 Pfam Elongation factor Tu C-terminal domain 275 374 IPR004160 -
Pumo10g01966 376 SUPERFAMILY Translation proteins 182 278 IPR009000 -
Pumo10g01966 376 FunFam Elongation factor Tu 183 311 - -
Pumo10g01966 376 FunFam Elongation factor Tu 1 180 - -
Pumo10g01966 376 Pfam Elongation factor Tu domain 2 202 270 IPR004161 GO:0005525
Pumo10g01966 376 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 18 33 IPR031157 -
Pumo10g01966 376 NCBIfam elongation factor Tu 2 376 IPR004541 GO:0003746|GO:0005525|GO:0006414
Pumo10g01966 376 PRINTS GTP-binding elongation factor signature 98 107 IPR000795 GO:0003924|GO:0005525
Pumo10g01966 376 PRINTS GTP-binding elongation factor signature 61 72 IPR000795 GO:0003924|GO:0005525
Pumo10g01966 376 PRINTS GTP-binding elongation factor signature 25 33 IPR000795 GO:0003924|GO:0005525
Pumo10g01966 376 PRINTS GTP-binding elongation factor signature 45 55 IPR000795 GO:0003924|GO:0005525
Pumo10g01966 376 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 196 IPR027417 -
Pumo10g01966 376 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 1 181 IPR000795 GO:0003924|GO:0005525
Pumo10g01966 376 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 275 375 IPR009001 -
Pumo10g01966 376 PANTHER ELONGATION FACTOR TU-RELATED 8 375 - -
Pumo10g01966 376 CDD EF_Tu 1 180 IPR041709 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01966 Pumo-Chr10 25935143 25936273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01966 4 374 Eukaryotic Initiation Factors Gene Family AT5G60390 30.923 2.28e-40 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01966 K02358 - gmx:100793431 717.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01966 10 25935143 25936273 Pumo10g01966 10 25935143 25936273 ECH
Pumo4g01465 4 18545190 18545858 Pumo10g01966 10 25935143 25936273 PCT