Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01965 ATGCCGCAGGATTCCTCCGAACAAGACCTCGACGATCCCGACATCGAGTTCGTCGAGGTTGATCCCACATGTCGTTATGGTCGGTACAAGGAAGTTTTAGGGAAAGGGGCTTTCAAGAAAGTATATCGAGCGTTTGATGAGTTGGAAGGGATTGAAGTGGCTTGGAATCAGGTTAAGGTGGCGGATCTGTTGCGTAACTCTGAAGATTTGGAGCGACTTTATTCAGAGGTTCATTTGCTCAAGACTTTGAAGCATAAGAATATAATTAAGTTTTACAACTCATGGGTTGACGCCAAGAATGAGAACATCAACTTCATTACTGAAATTTTCACCTCAGGAACGTTACGCCAATACCGGAAGAAACATAAGCATGTTGATTTGAGAGCTGTGAAGAAATGGTCTAAGCAGATTTTGGAAGGCCTTTCATATCTTCACAGTCACAATCCACCGGTTATTCATCGAGACCTTAAGTGTGATAACATTTTTGTCAATGGGAATCAAGGGGAGGTGAAAATTGGTGACTTAGGGTTGGCAGCTATCCTTCAACAGGCCAATTCAGCTCACAGTGTCATAGGTACCCCTGAGTTCATGGCCCCAGAACTTTATGAAGAGGAATACAACGAGCTTGTTGACATCTACGCTTTTGGCATGTGCTTGCTAGAGTTGGTAACCGTTGAGTACCCGTATATTGAATGTAGCAATGCTGCTCAAATATACAAGAAAGTGACATCTGGAATAAAGCCGGCATCATTGGCAAAGGTGACAGATCTTGAAGTTAAAGCATTTATTGAAAAGTGTATCGCTCATGTATCTGAACGGTTGTCTGCGAAGGACCTCTTGATGGATCCCTTCCTTCAGTCAGATTATGATAATGAAAGTGTAGGTCGATCTTCAAGATCTCAAACCCATCATTCAGGTAAATATACTTTGCATCTAAATTCCACAGTTATCTTATTTTGTTTACTATCTGATGTATCGAATGCAGGAAATAATTCTCATAATCTAGCTATTGCTGAGGATAATTCTGTTGAGACAAGTAGGGAATTCACGGTGGAAGGTCAGAGGAGAGATAATAATACAATATTTTTAAAATTGCGAATTGCAGATTCCTCAGGTAATATTCGCAATATCCACTTTCCTTTTGATATTGAAGCAGACACTTCAACCTCTGTTGCTAGTGAAATGGTTGAGGAGTTGGAACTTACTGATCAAGATGTTACAACTATTGCTAGGATGATTGACTCTGAAATTCAATATCACAATCCTAGTTGGAATTCCAGTGAAACTCCTGTTGACATTGATTGTCAAGATTCAGGCTGTACCTCTGAAACTAGGCCAGAGGCCTCTTCTATGAAAAATGATTCCATTGCTTCTCCTGGCAGTCTTGCATTAGAAATATTACCTTCAGGTCGTAAGTACTGGTCAGATTCACCAAGGGGAGTTGGTGGAAATTCTCCATCTCGGCCTGTTACTTCACACTTCTCTAAAGAAGCAGATGCGAATGCTGAGGAAGGCAGCCTGACTGCAAATGGTGATATTTCTGCTGATGATTGTGTTGATGGTACTGCTGAGAAGGAATGTGATGAGACTGCTGACTCCCCTTCCAGTGAAAAATCTTCTCAGAAAGAAATATCTCCAAGTTTGAAAGATTCTGAAACAGAATACATCAATCAAATAGCAACGAAACTGGAGAATTTGTTGGTTAAACAAAGAGAGGAGTTAGATGAACTAAAGAGAAAGCACAAATTAGCTGTCTTGGATCTTTTGAAGGAGCTTCCTCCAGAAATGTGCCAGAAGGTCCTAAATATATGCAACCTGCAGATGCCTGGCGGTGAAATGTAG 1842 0.4093 MPQDSSEQDLDDPDIEFVEVDPTCRYGRYKEVLGKGAFKKVYRAFDELEGIEVAWNQVKVADLLRNSEDLERLYSEVHLLKTLKHKNIIKFYNSWVDAKNENINFITEIFTSGTLRQYRKKHKHVDLRAVKKWSKQILEGLSYLHSHNPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQANSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTVEYPYIECSNAAQIYKKVTSGIKPASLAKVTDLEVKAFIEKCIAHVSERLSAKDLLMDPFLQSDYDNESVGRSSRSQTHHSGKYTLHLNSTVILFCLLSDVSNAGNNSHNLAIAEDNSVETSREFTVEGQRRDNNTIFLKLRIADSSGNIRNIHFPFDIEADTSTSVASEMVEELELTDQDVTTIARMIDSEIQYHNPSWNSSETPVDIDCQDSGCTSETRPEASSMKNDSIASPGSLALEILPSGRKYWSDSPRGVGGNSPSRPVTSHFSKEADANAEEGSLTANGDISADDCVDGTAEKECDETADSPSSEKSSQKEISPSLKDSETEYINQIATKLENLLVKQREELDELKRKHKLAVLDLLKELPPEMCQKVLNICNLQMPGGEM 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01965 613 Pfam Protein kinase domain 30 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g01965 613 SUPERFAMILY Protein kinase-like (PK-like) 30 286 IPR011009 -
Pumo10g01965 613 MobiDBLite consensus disorder prediction 518 536 - -
Pumo10g01965 613 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 12 589 - -
Pumo10g01965 613 FunFam probable serine/threonine-protein kinase WNK9 110 290 - -
Pumo10g01965 613 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g01965 613 Gene3D Transferase(Phosphotransferase) domain 1 110 292 - -
Pumo10g01965 613 CDD STKc_WNK 25 285 - -
Pumo10g01965 613 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 363 417 IPR024678 GO:0004674|GO:0005524
Pumo10g01965 613 FunFam Probable serine/threonine-protein kinase WNK1 12 108 - -
Pumo10g01965 613 MobiDBLite consensus disorder prediction 480 494 - -
Pumo10g01965 613 Coils Coil 560 587 - -
Pumo10g01965 613 MobiDBLite consensus disorder prediction 436 457 - -
Pumo10g01965 613 MobiDBLite consensus disorder prediction 436 459 - -
Pumo10g01965 613 FunFam Probable serine/threonine-protein kinase WNK3 359 450 - -
Pumo10g01965 613 SMART serkin_6 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g01965 613 Gene3D - 359 451 - -
Pumo10g01965 613 Gene3D Phosphorylase Kinase; domain 1 11 108 - -
Pumo10g01965 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Pumo10g01965 613 MobiDBLite consensus disorder prediction 475 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01965 Pumo-Chr10 25925246 25929769 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01965 103 601 MAP Kinase Kinase Kinase AT3G48260 52.800 4.94e-164 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Pumo10g01965 Pkinase 3.6e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01965 K08867 - gmx:100272204 972.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01965 10 25925246 25929769 Pumo10g01965 10 25925246 25929769 ECH