Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01948 ATGGCCGAGTCCTACCTCCTCTCTTCTTCCTCCTCACTCTTCCACAACAAAACCAAACCCTCTCTTTTCTCACCTCCCTCCAAACCCCTCACACTCCAATTCTCATGCCTCAACTCCTCACCTTCACCCTCGCTCTCTCTCTCCCTCTCCCTCTCCGCACGAGCCAACCGTTCCCCCGTCCTCACGCACGTGGCCCAAACTTCCGATTGGGCCCAACAAGAAGAAGACGACACCGCCACCTTCCAAGACGAAGAAGAACAACAGGGCCTTAGCGAAACCGAAGCGGGCCTTTCCAATTGGGAGCCCAACGGCGAAGTCGCGGAAGAAGAGGCTTTCGTGGAACCGCCGGAGGAGGCAAAGCTCTTCGTTGGGAACTTGCCTTACGACGTTGATAGCCAGAAATTGGCCATGCTTTTCGAACAAGCCGGAACCGTTGAAATCGCCGAGGTTATTTATAACAGGGAAACTGACCAGAGTCGCGGATTTGGGTTTGTGACAATGAGTACTGTTGAAGAAGCTGAGAACGCTGTGGAGAAATTCAATCGCTACGATATCGATGGAAGATCGTTGACTGTTAATAAGGCTTCTCCAAGAGGAACTCGGCCTGAACGCCCACCTCGTCGTACCTTTGAGCCTGCTTTATCAATCTATGTTGGTAATTTGCCATGGGATGTTGATAATACCCGGCTGGAGCAAATTTTCAGTGAACATGGTAATGTTGTGAATGCTCGAGTAGTCTATGACAGGGAGACTGGTCGATCACGTGGCTTTGGCTTTGTAACAATGTCCGATGAGACAGAAATGAATGATGCCGTTGCTGCTCTTGATGGTCAGAGTTTGGACGGAAGGGCAATTAGGGTGAGTGTTGCTGAGGACAGGCCAAGGCGTGGCTCCTTTTGA 900 0.5122 MAESYLLSSSSSLFHNKTKPSLFSPPSKPLTLQFSCLNSSPSPSLSLSLSLSARANRSPVLTHVAQTSDWAQQEEDDTATFQDEEEQQGLSETEAGLSNWEPNGEVAEEEAFVEPPEEAKLFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAENAVEKFNRYDIDGRSLTVNKASPRGTRPERPPRRTFEPALSIYVGNLPWDVDNTRLEQIFSEHGNVVNARVVYDRETGRSRGFGFVTMSDETEMNDAVAALDGQSLDGRAIRVSVAEDRPRRGSF 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01948 299 FunFam 31 kDa ribonucleoprotein, chloroplastic 203 298 - -
Pumo10g01948 299 Gene3D - 62 207 IPR012677 -
Pumo10g01948 299 Gene3D - 208 299 IPR012677 -
Pumo10g01948 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 190 IPR000504 GO:0003723
Pumo10g01948 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 286 IPR000504 GO:0003723
Pumo10g01948 299 SUPERFAMILY RNA-binding domain, RBD 115 208 IPR035979 GO:0003676
Pumo10g01948 299 CDD RRM1_PSRP2_like 120 199 - -
Pumo10g01948 299 MobiDBLite consensus disorder prediction 65 100 - -
Pumo10g01948 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 197 IPR000504 GO:0003723
Pumo10g01948 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 292 IPR000504 GO:0003723
Pumo10g01948 299 SUPERFAMILY RNA-binding domain, RBD 204 297 IPR035979 GO:0003676
Pumo10g01948 299 MobiDBLite consensus disorder prediction 1 23 - -
Pumo10g01948 299 CDD RRM2_NsCP33_like 216 290 - -
Pumo10g01948 299 PANTHER OS02G0815200 PROTEIN 16 294 - -
Pumo10g01948 299 SMART rrm1_1 120 193 IPR000504 GO:0003723
Pumo10g01948 299 SMART rrm1_1 215 288 IPR000504 GO:0003723
Pumo10g01948 299 FunFam 31 kDa ribonucleoprotein, chloroplastic 65 202 - -
Pumo10g01948 299 MobiDBLite consensus disorder prediction 76 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01948 Pumo-Chr10 25679736 25682680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01948 108 296 Eukaryotic Initiation Factors Gene Family AT3G16380 34.500 5.23e-23 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01948 - - gmx:100810381 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01485 4 18800224 18802651 Pumo10g01948 10 25679736 25682680 ECH
Pumo10g01948 10 25679736 25682680 Pumo10g01948 10 25679736 25682680 ECH
Pumo4g01485 4 18800224 18802651 Pumo10g01948 10 25679736 25682680 PCT