Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01940 ATGGATCCCCCTGTTTCCCCAATCCCCTCCACAACCAGCTCTTACCACCCGAACCGACTTTATTTACACACTACCGCTGGGAAACCGCATTCCAGCGCACGCAACCATTCTGGCTTCGGCATCCCCAGTTTTAGAAAACGTCGTACGTCCAACCGAGTCGTCAAATTCCACGAGGCGTTCAGACGGCGCCGTCACGGCCTTCGTAGCGTTCCTCTACTCCTCCAGGGTGCGCGCAGGTGCACGGAGGAGGATATGGACGAGTACGGGGTGCACCTTCTAGCATTGTCGCACGTGTATTCGGTGACGCAGCTGAAGCAGAGGTGCATCAAGGGACTGGGCGAGCGCGTGAGCACGGAGAACGTGGTGGACGTGTTGCAACTGTCTCGGCTCTGCGACGCACCGGATCTCTACCTCAAGTGCGTGAAGCTCCTCGCAAACCACTTCAAAGCCGTGAAGGAAACAGAGGGATGGAAGTTCCTAGAGAACCACGACCCCTGGCTCGAACTCGACATTCTCCACCTCATAGACGAAAACGAAAAGAGGAAGAGGAGGGTGAGGAAGTGGAGGGAGGAGGAGAGGTTGTACGCGCAGCTGAGCGAGGCGATGGAGTGTTTGGAGCACATATGCACGGAGGGGTGCACGGAGGTGGGGCCGTACGAGGTGGAGGTTGGGAGACAGAGAGGACCGTGCTCAAAGTTCGCCACGTGTCAGGGTTTGCAAGTGTTGATTCGACACTTCGCCACTTGCAAGAGGAAGCTCAAGGGAGGGTGTTTGAGGTGTAAGCGCATGTGGCAGCTCTTCAGACTCCACTCCTCCATTTGCCTGTGCCAAGATTCATGCAAGGTTCCTCTTTGCAGGCAAATTCGATTGAAAATGGAGCAAGAGAACATGAAAGATGATGCAAGGTGGAAACTACTAGTGAGGAAGGTGGCCTCTGCCAAAGCCTTGTCTTCCTTGGCACTACCAAAGAAAGAGGAAGCGGGTTGA 987 0.5532 MDPPVSPIPSTTSSYHPNRLYLHTTAGKPHSSARNHSGFGIPSFRKRRTSNRVVKFHEAFRRRRHGLRSVPLLLQGARRCTEEDMDEYGVHLLALSHVYSVTQLKQRCIKGLGERVSTENVVDVLQLSRLCDAPDLYLKCVKLLANHFKAVKETEGWKFLENHDPWLELDILHLIDENEKRKRRVRKWREEERLYAQLSEAMECLEHICTEGCTEVGPYEVEVGRQRGPCSKFATCQGLQVLIRHFATCKRKLKGGCLRCKRMWQLFRLHSSICLCQDSCKVPLCRQIRLKMEQENMKDDARWKLLVRKVASAKALSSLALPKKEEAG 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01940 328 Pfam TAZ zinc finger 199 285 IPR000197 -
Pumo10g01940 328 CDD BACK 117 161 - -
Pumo10g01940 328 Gene3D TAZ domain 188 314 IPR035898 -
Pumo10g01940 328 SMART TAZ_2 192 286 IPR000197 -
Pumo10g01940 328 FunFam BTB/POZ and TAZ domain-containing protein 2 117 187 - -
Pumo10g01940 328 MobiDBLite consensus disorder prediction 23 43 - -
Pumo10g01940 328 SUPERFAMILY TAZ domain 190 289 IPR035898 -
Pumo10g01940 328 FunFam BTB/POZ and TAZ domain-containing protein 2 188 314 - -
Pumo10g01940 328 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 78 324 IPR044513 -
Pumo10g01940 328 Gene3D - 115 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01940 Pumo-Chr10 25582178 25585301 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Pumo10g01940 zf-TAZ 1.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01940 - - gmx:100813611 454.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01940 10 25582178 25585301 Pumo10g01940 10 25582178 25585301 ECH
Pumo4g01493 4 18852786 18856080 Pumo10g01940 10 25582178 25585301 PCT