Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01937 ATGACAAGCACTCTTCTGTCTTTACTTTTCTTGCTCTTCTCCCTTCTCACTCCAACTCTCATTTCCTCTTCACCAGTGCAAAACCCTGAAGAGGTCGTACAAGAGGTCAACAGGAAAATCAATGCCTCTATAGCCAGGCCTAGGAGGAACTTGGGCTACCTCTCATGCGGCAGTGGCAACCCCATTGATGATTGTTGGAGGTGCGACCCCGACTGGGAGCAGAACAGGCAAAGGCTAGCAGACTGCGCAATCGGGTTCGGCAAGAACGCCATCGGCGGGCGCGACGGCAAGATATACGTGGTGGACGACGACGGCGACGACGACCCGGTGAACCCGAAACCGGGAACCCTCCGCCACGCCGTGATCCAAGATGAGGCCCTATGGATCATCTTCGCCAGAGACATGGTCATCCAACTGAAAGAAGAGCTTCTCATGAACTCGTTCAAAACCATCGACGGCCGTGGCGCCAGCGTGCACGTTGCGGGGGGCCCATGCATAACGATACAGTACGTGACCAACGTGATCATCCATGGGATTCACATACACGATTGCAAGCAGGGCGGGAACGCTATGGTGCGGGACTCCCCACGGCACTATGGGTGGAGAACCGTGTCGGACGGCGACGGCGTGTCCATCTTCGGAGGGAGCCACGTGTGGGTCGATCATTGCTCGCTGTCGAACTGTAATGATGGGTTGATCGACGCCATCCATGGGTCCACCGCTATTACCCTTTCGAATAACTACATGACGCATCATGATAAGGTCATGTTGTTGGGTCACAGCGACTCGTACACCCAGGACAGGAACATGCAAGTCACTATTGCTTTCAACCACTTTGGTGAAGGCCTTGTTCAAAGGATGCCGAGGTGTAGGCTCGGGTATTTTCATGTGGTGAACAATGATTATACTCACTGGGAAATGTATGCTATTGGTGGAAGTGCTAATCCAACCATCAATTGCCAAGGCAACAGATTTGTTGCACCCGATGACAGATTCAGCAAAGAGGTGACAAAACGTGAAGATGCCCCAGAGAGTGAGTGGCAGAGTTGGAATTGGAGGTCAGAAGGGGACTTGTTAGTAAACGGTGCGTTTTTCACTGCATCGGGTGCTGGAGCCTCCTCTAGCTACGCAAGGGCTTCTAGCTTAAGTGCAAGACCATCTTCCCTTGTTGGTTCCATAACAACAAATGCTGGTGCACTCAGTTGTAAGAAAGGTTCTCCTTGCTGA 1227 0.5249 MTSTLLSLLFLLFSLLTPTLISSSPVQNPEEVVQEVNRKINASIARPRRNLGYLSCGSGNPIDDCWRCDPDWEQNRQRLADCAIGFGKNAIGGRDGKIYVVDDDGDDDPVNPKPGTLRHAVIQDEALWIIFARDMVIQLKEELLMNSFKTIDGRGASVHVAGGPCITIQYVTNVIIHGIHIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITLSNNYMTHHDKVMLLGHSDSYTQDRNMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINCQGNRFVAPDDRFSKEVTKREDAPESEWQSWNWRSEGDLLVNGAFFTASGAGASSSYARASSLSARPSSLVGSITTNAGALSCKKGSPC 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01937 408 SUPERFAMILY Pectin lyase-like 50 402 IPR011050 -
Pumo10g01937 408 SMART amb_all 134 331 IPR002022 -
Pumo10g01937 408 PRINTS Pollen allergen Amb family signature 106 131 IPR018082 -
Pumo10g01937 408 PRINTS Pollen allergen Amb family signature 206 227 IPR018082 -
Pumo10g01937 408 PRINTS Pollen allergen Amb family signature 82 99 IPR018082 -
Pumo10g01937 408 PRINTS Pollen allergen Amb family signature 286 305 IPR018082 -
Pumo10g01937 408 PRINTS Pollen allergen Amb family signature 350 374 IPR018082 -
Pumo10g01937 408 PRINTS Pollen allergen Amb family signature 379 402 IPR018082 -
Pumo10g01937 408 PRINTS Pollen allergen Amb family signature 308 327 IPR018082 -
Pumo10g01937 408 PRINTS Pollen allergen Amb family signature 142 158 IPR018082 -
Pumo10g01937 408 Pfam Pectate lyase 143 325 IPR002022 -
Pumo10g01937 408 Gene3D - 59 401 IPR012334 -
Pumo10g01937 408 FunFam Pectate lyase 59 401 - -
Pumo10g01937 408 PANTHER PECTATE LYASE 18-RELATED 26 406 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01937 Pumo-Chr10 25555539 25558259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01937 1 408 Polysaccharide Lyase AT5G63180 79.805 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01937 K01728 - gmx:100814679 745.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01937 10 25555539 25558259 Pumo10g01937 10 25555539 25558259 ECH
Pumo4g01494 4 18901665 18903750 Pumo10g01937 10 25555539 25558259 ECH
Pumo1g00405 1 5743404 5752949 Pumo10g01937 10 25555539 25558259 ECH
Pumo10g01937 10 25555539 25558259 Pumo4g01494 4 18901665 18903750 ECH
Pumo4g01494 4 18901665 18903750 Pumo10g01937 10 25555539 25558259 PCT