Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01936 ATGATGGATGGGCGGCGGCATTCAGTTGATATTCCAATTTCCAAAACTCTTGTGGCACTGAGGAGAGTCAGGTCATTGAGGGATCCGTCTACTAATTCTATGAGCAAACTCTCTTCTTTGGTTGACAATGTGCACTGGGAAAACGGTTCTGGTAATGAGATTTCCTTGCGGTTTTCGGATACCGCTTGGCCATGTGATTCTGATGACAATGCTGCTTTCAGATCAAGGAATTTAGGTTTTAAGGGACAAAGGGAGCCGAATGATGCTGATTTTGCATTGAATCATGGCTTGGTGAACTCAAGGTTGAAGCCTAGTGGGATGTCTTGTAAGGATGATCAACAAGATGATGAACTAGTTTACTCTAAGCCAAATCTGCAGTGCATTTCTGGAGATAAATCACCAAGTGAAAGCTGTGGCAGCAACCATGGGGGTAAAGGATTGGACATGGCTTGTATTGTACTTCCAAATAATACTTTCAAGGATGGGGATTCGTGCTATATAGCAACTGCTAGATCATCTCAGTTAGGGAGAATAGATTACCCTAAGTCAACCAAAAAGTCTCTACGCAAGAATCAAGTAAAACCATCAGAGGTAGTAGGCAGTATCGCTAGCCATGTAAGCAGTCCATGCCCTTCTGGCTATGATGCTTTCTCACTCCATAGTGCTTCAGTAGGTATAAATCAAGATGTTGATGTTTTATATAATAATGATATTGATGATGGATGTGGAATAAGCTGCTGTTGGTCAAAATCACCAAGGTTTAGAGAATCAAATCTATATGGTGAGATAGAAGACCATCCCTTGATATCGCACCGTGTTGATGAAACAGATCTTCATGCACACAGAAGCATGAGACACAATGGTGGTGGGATTAGTCCAACTTTGGAAACTCCCAGAAGTTTATCTATGAAATTCAGGCCTAAATCATTTAGTGATTTGGTGGGACAAAATGTGGTAGTAAGGTCACTTTTGGGTGCCATCTCCAGAGGAAGGATAACATCATTTTATCTCTTCTATGGTCCACGTGGTACCGGCAAGACATCTGCCTCTAGGATATTTGCTGCTGCACTGAATTGCCTCTCTGTTGAGGAGCAAAGGCCATGTGGTCTATGCAGAGAATGTGTTCTATTCTTTTCTGGAAGAAGTAAAGATGTTAAGGAAGTGGATTCTGTGAGAATCAATCGCACAGACCAGGTTAAATCCCTTGTTAAGAATGCAAGCATCCCTCCAGTTTCCTCACGTTTTAAGGTTTTCATTATTGATGAGTGTCAGTTATTGAATGGGGAGACATGGGCCAGCCTTTCAAATAGCCTAGATAACCTTTCTCAACATGTGGTTTTTGTGATGATCACTCCCGATTTGGATAAGCTTCCTCGATGTGCAGTTTCCCGGGCTCAGAGGTACCCCTTTCCAAAGGTTAAAGATGCTGACATTGTATGCAGATTAGAAAAAATTTGCACCGAAGAAGGTCTTGATTTTGAACAGGATGCTTTGGACTTTATTGCTGCAAAATCCTGTGGTTCTGTTAGGGATGCAGAAATTATGCTTGATCAGATGAGTTTGCTTGGTAAAAAGATCAATATTTCTTTAGCATATGAGCTTACTGGGATCATTTCTGATGATGAGTTGCTTGATTTGCTGGATCTGGCTTTGTCATCTGACACTTCAAATACAGTTATAAAAGCACGGGAGCTGATGAGATCAAGGATAGATCCTTTACAACTTGTATCACAGCTTGCAAATCTCATTATGGACATCCTTGCAGGGAAATGTGAAAATGGTGGTTCTGAAGTCAGAAGTAGATTTTCTAAGAGATACACCTCGGAAGCTGATCTTCAGAAACTAAACAATGCATTGAAAATACTTTCTGAAACTGAGAAGCAGTTAAGAATCTCTAAGAATCAAACAACATGGTTCATCGTAGCTCTCCTACAGTTAAGCTCTGTAGATTATCAATCTGTGGATGCAAATGATACCAAGTTAAGTCTTAGAGGTGCATGCAATGGAGGTCAAAGCTTGGAACATTTTGCTACAGGCCTGTGTGATAACAAGTCATACAGATTAGAAGTGCCAGAGGATCACAAAGGAACATTGGATTCCATTTGGTATAAAGCTACAGAGATGTGTCATTCTAGTCAGCTCAAAACTTTTCTCAGGAAGAAGGGGAAGTTGTCGTCACTTCATGTTGATCGCAGTACAGCTTGTCTTGCTATTGCCGAGTTGGAGTTCCACCATCGCCACCATGTATCCAAGGCTGAGAAGTCATGGAAAGCGATTGCAAGTTCCTTGCAGTTCATACTGGGTTGCAACATTGAGTTGAGGATCACTTATGCACCGTGTGCTTCTGATTCTAAGTATGCCAAACTTAGATCATCTTTCAGTATCTTCGGTTGCTCACGCAGAATTCGACAACAGAAGTCCTTGTCATCTAATGAACAAGGAAGTGAATCAGATTATGCTGATTACACATCTGAAAATCCCATGATGAAGGATAGAACTTCTACCTCTGATTGTGGAATGGATGCAGTAACCGCTTTGAGGAGTAGTGAAGGGAATTTGCTCAGCTCAGGAGAAAGATTTTTGAATAGGTCATTTCAAGAGACTATGAGGACATCATGTGCTGAAGTGGATTCCTCCAAGAAAGAGGGATACAATTGTGCATATCTTGATCCATCAATGCTTGACTCAGATAATAATCACTCTAACTGTTTTCCTAAAACTCTTTGGCTTCAAAAGAAGTTCCGTTCTTCATATTCATCCAAGTTGACTTTTCAGGGTATTCAACAACAGAAAGATTTTGTTATATCTGTCCCAAAGTGTACATGTTCTGGGACATATACCTATGCTAACGAACCCAGCATTTTTTCCAGTAGTTGTAAGAACTGCACCAAAGCCTTAGAAAAAGTAGGTTGA 2913 0.4089 MMDGRRHSVDIPISKTLVALRRVRSLRDPSTNSMSKLSSLVDNVHWENGSGNEISLRFSDTAWPCDSDDNAAFRSRNLGFKGQREPNDADFALNHGLVNSRLKPSGMSCKDDQQDDELVYSKPNLQCISGDKSPSESCGSNHGGKGLDMACIVLPNNTFKDGDSCYIATARSSQLGRIDYPKSTKKSLRKNQVKPSEVVGSIASHVSSPCPSGYDAFSLHSASVGINQDVDVLYNNDIDDGCGISCCWSKSPRFRESNLYGEIEDHPLISHRVDETDLHAHRSMRHNGGGISPTLETPRSLSMKFRPKSFSDLVGQNVVVRSLLGAISRGRITSFYLFYGPRGTGKTSASRIFAAALNCLSVEEQRPCGLCRECVLFFSGRSKDVKEVDSVRINRTDQVKSLVKNASIPPVSSRFKVFIIDECQLLNGETWASLSNSLDNLSQHVVFVMITPDLDKLPRCAVSRAQRYPFPKVKDADIVCRLEKICTEEGLDFEQDALDFIAAKSCGSVRDAEIMLDQMSLLGKKINISLAYELTGIISDDELLDLLDLALSSDTSNTVIKARELMRSRIDPLQLVSQLANLIMDILAGKCENGGSEVRSRFSKRYTSEADLQKLNNALKILSETEKQLRISKNQTTWFIVALLQLSSVDYQSVDANDTKLSLRGACNGGQSLEHFATGLCDNKSYRLEVPEDHKGTLDSIWYKATEMCHSSQLKTFLRKKGKLSSLHVDRSTACLAIAELEFHHRHHVSKAEKSWKAIASSLQFILGCNIELRITYAPCASDSKYAKLRSSFSIFGCSRRIRQQKSLSSNEQGSESDYADYTSENPMMKDRTSTSDCGMDAVTALRSSEGNLLSSGERFLNRSFQETMRTSCAEVDSSKKEGYNCAYLDPSMLDSDNNHSNCFPKTLWLQKKFRSSYSSKLTFQGIQQQKDFVISVPKCTCSGTYTYANEPSIFSSSCKNCTKALEKVG 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01936 970 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 301 701 - -
Pumo10g01936 970 FunFam DNA polymerase III subunit gamma/tau 474 536 - -
Pumo10g01936 970 FunFam Protein STICHEL-like 1 isoform C 537 650 - -
Pumo10g01936 970 MobiDBLite consensus disorder prediction 807 836 - -
Pumo10g01936 970 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 302 522 IPR027417 -
Pumo10g01936 970 Gene3D - 294 471 IPR027417 -
Pumo10g01936 970 NCBIfam DNA polymerase III subunit gamma/tau 300 646 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Pumo10g01936 970 SUPERFAMILY post-AAA+ oligomerization domain-like 543 645 IPR008921 GO:0003677|GO:0006260
Pumo10g01936 970 Pfam DNA polymerase III, delta subunit 316 473 - -
Pumo10g01936 970 CDD HLD_clamp_pol_III_gamma_tau 473 536 IPR045085 -
Pumo10g01936 970 Gene3D - 474 536 - -
Pumo10g01936 970 Coils Coil 612 635 - -
Pumo10g01936 970 Gene3D - 537 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01936 Pumo-Chr10 25501176 25506745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01936 291 629 Core DNA Replication Machinery Family AT1G21690 25.073 4.03e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01936 - - gmx:100812040 1742.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01936 10 25501176 25506745 Pumo10g01936 10 25501176 25506745 ECH
Pumo4g01496 4 18943994 18945186 Pumo10g01936 10 25501176 25506745 PCT