Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01934 ATGACGTGTAGTTATCACAAAACCCCAAACCCCCAACCCGATTTGGATCCAATTAGGGTTCTTTCGGATCCTCTCCACCGCCTCCAATTCCCAAATACCCTTCCTCCTCCTGTCTTGGCTCGAGATCTGAGCCAAGCACGGGACAACAACTATTCGATTCAGATTTCCGTCTCCACTCTCTCTTCAGTTTTGCACGTGAATGGCATCAAGCGAGGGAATGTGGAGAATTTGTCTTCCTCGCCGAAATCTCCATCCTCCTTGCTTGCTGAACATCATCATCATCATGTGAGAGCTCCTTCTGGGGGTGGTAAGGCACAGACTGCTGGGCATGCTGTCAGGCATGTGCGCCGTTTGCACTCGGGAAAGTTTGGGCAGGTGAAGAAGGACAGGAATGACCCAAACTATGATAGTGGCGAGGAACCTTATCAACTGGTTGGATCTATTGTTACTGATCCGTTAGATGGATTCAAGAAAGCTGTAGTATCCATCATAGAGGAATATTTCAGTACCGGGGATGTGGACATGGTTGCATCTGATCTCAGGGAACTTGGATCAAACGAATATTATCCATACTTCATTAAGCGTCTTGTATCCATGGCCATTGATAGGCATAATAAAATCAGGGATGGGTTTTTTATGCTTATTGAATCTGCTAATGATCTTGCAGTGGACATACTGGATGCAGTTGACATCCTTGCTTTATTTATGGCACGTGCTGTTGTGGATGACATCATTCCTCCAGCCTTTCTTGCCAGAGCCAGGAAGGCTCTTTCGGAATCTTCCAAGGGAGTTCAGGTAATCCAGACTGCTGAAAAAAGTTATCTCTCAGCTCCACACCATGCAGAACTTGTGGAGAGGCGATGGGGTGGTAGCACTCACATTACTGTTGAAGATGTGAAGAAGAGGATTGCCGATTTATTAAGAGAATATGTGGATAGTGGTGACACATTTGAAGCCTGTAGGTGTATACATGAGTTGGGGGTTTCATTCTTCCATCATGAGGTTGTGAAGAGGGCTCTGGTACTTGCCATGGAGATCCATTCAATAGAACCTCAAATGTTGAAGCTATTAAAAGAAGCAGCAGAAGAAGGACTCATTAGTTCCAGCCAAATGGTGAAAGGATTTTCTCGTTTGGAAGAAGTTCTAGATGATCTTGCTCTTGATATTCCATAA 1173 0.451 MTCSYHKTPNPQPDLDPIRVLSDPLHRLQFPNTLPPPVLARDLSQARDNNYSIQISVSTLSSVLHVNGIKRGNVENLSSSPKSPSSLLAEHHHHHVRAPSGGGKAQTAGHAVRHVRRLHSGKFGQVKKDRNDPNYDSGEEPYQLVGSIVTDPLDGFKKAVVSIIEEYFSTGDVDMVASDLRELGSNEYYPYFIKRLVSMAIDRHNKIRDGFFMLIESANDLAVDILDAVDILALFMARAVVDDIIPPAFLARARKALSESSKGVQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEDVKKRIADLLREYVDSGDTFEACRCIHELGVSFFHHEVVKRALVLAMEIHSIEPQMLKLLKEAAEEGLISSSQMVKGFSRLEEVLDDLALDIP 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01934 390 Pfam MA3 domain 300 390 IPR003891 -
Pumo10g01934 390 Pfam MA3 domain 156 206 IPR003891 -
Pumo10g01934 390 SUPERFAMILY ARM repeat 295 390 IPR016024 -
Pumo10g01934 390 MobiDBLite consensus disorder prediction 75 110 - -
Pumo10g01934 390 PANTHER PROGRAMMED CELL DEATH 4 86 390 IPR039778 GO:0045892
Pumo10g01934 390 SUPERFAMILY ARM repeat 155 292 IPR016024 -
Pumo10g01934 390 SMART ma3_7 156 246 IPR003891 -
Pumo10g01934 390 SMART ma3_7 299 390 IPR003891 -
Pumo10g01934 390 Gene3D - 284 390 - -
Pumo10g01934 390 Gene3D - 208 276 - -
Pumo10g01934 390 Gene3D - 151 207 - -
Pumo10g01934 390 ProSiteProfiles MI domain profile. 298 390 IPR003891 -
Pumo10g01934 390 ProSiteProfiles MI domain profile. 129 255 IPR003891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01934 Pumo-Chr10 25478337 25480984 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01934 284 390 Eukaryotic Initiation Factors Gene Family AT5G57870 28.440 2.77e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01934 - - gmx:100815729 542.347