Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01928 ATGGGAGGAGGTATAGAGGGAAACGGCGACGTTTTGCCATGGCTGAAATCGCTGCCGGTGGCGCCGGAGTACCGGCCGAGCGCGGCGGAGTTCCAAGATCCAATCGCTTACATATTCAAGATCGAGAAGGAGGCTTCCAAGTACGGCATCTGCAAAATCATCCCTCCCTTCCCACCTTCCCCGAAGAAAACCGCCATCGCGAACCTCAACCGCTCACTCGCGGTTTCCGGTTCCACATTCACCACGCGCCAGCAGCAGATCGGGTTCTGCCCCCGCAGGCCCAGGCCCGTCCAGCGGCCCGTTTGGCAGAGCGGCGACCACTACACCTTCCAGGAGTTCGAGTCCAAGGCCAAGTCCTTCGAGAAGACATACCTAAAACGCCACACCAAGAAGGGCTCGGGCTCGGGCTCGGGCTCCTCGGGCCTTGGCCCGCTCGAGACGGAAACACTGTTCTGGAAGGCCACGCTGGACAAACCCTTCTCCGTGGAATACGCGAACGACATGCCGGGCTCCGCGTTCTCCCCGAAATGCCGGCACGCAGGGGATCCGAGCTCCCTCGCGGACACTCCGTGGAACATGAGAGCGGTTTCTCGTGCCAACGGCTCGCTCCTGCGGTTCATGAAGGAGGAGATTCCGGGCGTTACTTCGCCCATGGTTTACGTGGCGATGCTCTTCAGCTGGTTCGCGTGGCACGTCGAGGACCACGACCTGCACAGCCTCAACTACCTCCACATGGGCGCCGGCAAGACCTGGTACGGCGTCCCCCGCGACGCCGCCGTCGCCTTCGAGGAAGTCGTTAGGGTTCACGGCTACGGCGGAGAGATTAACCCCCTCGTTACTTTTGCTATTCTTGGTGAGAAAACCACAGTGATGTCGCCTGAAGTATTTATTAGTGCAGGTGTTCCATGCTGCAGGTTAGTACAAAATGCTGGGGAATTTGTTGTGACGTTTCCAAGAGCCTATCACACTGGTTTTAGTCATGGTTTTAATTGCGGAGAGGCAGCGAACATTGCAACACCTGAGTGGTTGAGGGTTGCTAAAGATGCTGCTATTCGGAGGGCTTCACTAAATTATCCTCCCATGGTTTCACATTTCCAGTTACTTTATGACCTTGCCTTAGCTTTGTGTTCTAGAATTCCTGCGAGCATCAGTGCTGAACCTCGTAGTTCTCGTCTTAAAGATAAGAAGAAGGGTGAAGGAGAAACTGTAATTAAAGAACTATTTGTGCAGGATGTGTTACAGAACAATGATCTGCTTCATATACTTGGGAAAGGGATCTGCTGTAGTACTTCTTCCTCGTAG 1302 0.5499 MGGGIEGNGDVLPWLKSLPVAPEYRPSAAEFQDPIAYIFKIEKEASKYGICKIIPPFPPSPKKTAIANLNRSLAVSGSTFTTRQQQIGFCPRRPRPVQRPVWQSGDHYTFQEFESKAKSFEKTYLKRHTKKGSGSGSGSSGLGPLETETLFWKATLDKPFSVEYANDMPGSAFSPKCRHAGDPSSLADTPWNMRAVSRANGSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVHGYGGEINPLVTFAILGEKTTVMSPEVFISAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASLNYPPMVSHFQLLYDLALALCSRIPASISAEPRSSRLKDKKKGEGETVIKELFVQDVLQNNDLLHILGKGICCSTSSS 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01928 433 Pfam jmjN domain 22 55 IPR003349 -
Pumo10g01928 433 FunFam Probable lysine-specific demethylase ELF6 14 358 - -
Pumo10g01928 433 Pfam JmjC domain, hydroxylase 218 336 IPR003347 -
Pumo10g01928 433 ProSiteProfiles JmjC domain profile. 178 354 IPR003347 -
Pumo10g01928 433 PANTHER LYSINE-SPECIFIC DEMETHYLASE 13 422 - -
Pumo10g01928 433 SUPERFAMILY Clavaminate synthase-like 104 372 - -
Pumo10g01928 433 SMART JmjN_1 20 61 IPR003349 -
Pumo10g01928 433 ProSiteProfiles JmjN domain profile. 21 62 IPR003349 -
Pumo10g01928 433 Gene3D Cupin 14 358 - -
Pumo10g01928 433 SMART cupin_9 185 354 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01928 Pumo-Chr10 25436229 25440473 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01928 7 422 C2H2 Transcription Factor Family AT5G04240 45.257 1.51e-144 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pumo10g01928 JmjC 1.7e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01928 - - gmx:100775271 795.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01928 10 25436229 25440473 Pumo10g01928 10 25436229 25440473 ECH