Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01927 ATGAGGGAATGCATTCCTCAAAAGGTTTTGTTTCTGATGATCTGGTATTCAACAGGAGTCATGGAATCAAGCAAGAAAAAAGGTTTCTATTCTGTGAAAGACAAGTTTACTACGTTGTATGAAAGGAACAGGATTTCCTCTTTTGATGTAAATGGTAACATAAGCACTTCAAGTTCTAAGCCACTTCTAAGAGACACTGAAAGAGAAACTAGTCAAGGAGATGGGCTGTCAGATCAGAGACTGTTTTCATGTGTCACATGTGGAATAATAAGCTTTTCCTGTGTTGCTATTGTACAGCCTAGAGAACCAGCAGCTAGATATCTTATGTCAGCTGATTGCAGCTTCTTTAATGATTGGGTTGTTGGTTCTGGAGTATCTAACAATAAATTTACTACTGCCCATGAAGAAGCAACTATTCCTGTGCCAAATATGTATACAGGATGGATGAAAAAGAATGTCCAAGATGGTATACATGATGTTCCTGTTCAATCTTCTCGGGAGACTTTAAATACTGTAAATGAAAATGGCAATACAGCTCTTGCATTATTGGCTTCAGCATATGGAAATTCTTCGGACTCTGAGGAAGATCAAATTGCGATTGATAGTCATGAATCAAATGTGATAAACACTGCTTCAGAAAGTTTACTTTCTCATACTCAAGATTCCAATGCTAGTTCCATGACTGCACTTGATAGGGGAGATGATATTCCTTTAAATAGTGCCAGTTGTGAGGATTTTATGCATCGTAGATTTGAGTGTAATTTGAGTCATCAGTCTTTAGACCACTCAGGGGTTACATTTGAAAATACAAGGATGGTACCTAGTTCCTCCTCTAATTGTTCCCAAGATGCTCATGATGCTGAAAGGTCATTGTCTAACAAGTCTTTGGTTCCCTTTGATAATAAAAATGCTTCAATGGTGCTACAATCTGATGAAGACTCATCCAGAATGCATGTTTTTTGTCTAGAGCATGCTGCAGAAGCAGAGCAGCAACTTCGCCCAATAGGCGGAGCCCACATATTTCTCCTATGTCATCCAGATTATCCCAAGATAGAGGCTGAAGCAAAAATGGTGGCAGAAGATTTGGGGATTGATTACATGTGGAAGAATATTGAATACAGGCATGCTTCCAAGGAAGATGAGGAGAGGATCCAGTCGGCTCTGGATAGCGAGGAAGCTATTCCTGGGAATGGTGACTGGGCTGTAAAGCTAGGAATCAATCTCTTTTATAGTGCAAATCTTAGCCGCTCTCCTCTTTATAGTAAGCAGATGCCTTACAATTCTGTTATATACTATGCATTTGGTTGTAGCTCTCCAACAAGCTCACCTGTAGAGCCAAAGGTCTACCAAAGAAGGGTCAACAGGCAGAAAAAGGTTGTTGCTGGGAAATGGTGTGGTAAAGTTTGGATGTCCAATCAGGTCCATCCCCTTTTAGCAAAAAGAGATTCTGAAGATTTTGAGGATGAGAAACTCTTACTTGGGTGGATATTACCTGATGAGAAAATTGAGAGATCAGAAATTACTCCCAAAAGCGAAACTACTAGCAGAAAATCAGGTAAGAAAAGGAAAATGACAGCAGAGAATGGACGAACCAGGAAAGGAAGTTATGCTAAGAAAAATGTAGTTTCAGATAATTCCACTGAAGATAAACCCAACTCAAAGCCAAGGAGGATTCTTAGAAGTAAGAAAGCCAGGCATGTTGAGAGAGACCGTGCTGCTTTGAGAGGGGATTATTCTCCTCCATATCATCATAGAAAACCTATAAGCAAGCAAACAAACTGCACTGAAAGTGATGCAGTTTCTGATGATACGCTTGATGATGATGATCACATGCAGCATAGGAGGAATGCTAATGTTGTAAAGGCTAAATTTATTGACAATGATGTGGTTTCAAATGATACAGTGGACTATGATTCTGATTGGCAGCAGAGGGAAGAACTTAGCAGCAAGGAAGTTGAAGATACAGAGAGAGATGCAATTTCAGAGGATTCTTTGGATGTTGGTTCTCTTCAGCTGCATAGGAAGACTTCCAAAGGCAAGCAAGCCAAATACATTAGTGAAGAAGACATAATTTCTGATGATCAAATGGAGAGTCGTTTTCAGAAGCGACAAAGGAGAATTCCTAAAAGCAGTCAAGGCAAATACCTTACTGGAAAAGATATAATTTCTGATGACCAACTAGAGCTGAAAATGCAGAAGCAGCAACGGAGGAATCCTAAAAGCAGGCAAGCCAAATACCCCAATGAAGAGGATATTGTATCAGATGACCAATTGGAGGTCCATTATCGGAGGTATCAAAGAAGGACTCCTAAAGGCAGGCGGGCCAAATGTGTAGCAGGGGAAGATGAAATGTCTGATGACCAATTGGAGGATCATTGTCAGAAGCAGCAAACAAGTTTCTCTAGGAAAAGGCAAAACAAAGGCATGGATAGAGAAGTTAAAAATGTAATGTCTGATGACCAATTGGGGGATCATTTTCTGAAGCAGCAGAGAAGATTTCCTAAGAGCAAGCAAAACAAACACTCTGATAAAGGAGTTACGGATGACTCGGCTGAAAATATTTCTCATCTGCTGCATAAAACTCCTAAAAGGAAGCAAGCTAAATGCATGGACGAAGATGATATGAATTCAGATGATGAAATGGAAGATGATCAGCAGCTGAGGAGGACTCTTCGAAGTAAACAATCTAAACCAAAGACACTTCAACAGATGAAACAAGCCAATTCCCTGCAAGTGAAAAACCAGGCATCTCGGTCCATAAAACGGGGTTCTCGGATGGTTGTAAAATCAAAGGCTCCTCAGCAAATAAAACAGCGGAATAAGCAAGCCAGTAACTCCCAAGAGTTTAGTTTACATATGGAAGAGGAGGAAGAAGGTGGACCTAGCACCCGCCTTAGGAAGAGAGCCACAAAAGCTCAGGAATCTGAAGGAAAGTCGAAAGACAAGCAAACAAAAAAGAAGGTCAAGAGTGCTGCAGCTGCAAAGGTTTCAGTTGGTCATGCCAAAACGAAGGATGGGGAAGCAGAATATCATTGTGACATTGATGGGTGCACTATGAGCTTTGGGTCGAAACAGGAGCTTCTGCATCATAAGAGAAATATCTGCCCTGTAAAAGGGTGTGGGAAGAAGTTTTTCTCACACAAGTATCTGGTGCAGCACCGACGAGTTCATGAGGACGAGCGCCCCTTGAAGTGCCCTTGGAAGGGATGCAAGATGACTTTCAAGTGGGCATGGGCTCGTACTGAGCACATTCGAGTCCACACTGGTGCACGGCCTTATGTATGTGCTGAGCCAGGTTGTGGACAAACATTCAGATTTGTGTCTGATTTCAGTCGTCATAAGCGAAAGACTGGGCATTCAGCAAAGAAGAGTCGTCAATAG 3381 0.4135 MRECIPQKVLFLMIWYSTGVMESSKKKGFYSVKDKFTTLYERNRISSFDVNGNISTSSSKPLLRDTERETSQGDGLSDQRLFSCVTCGIISFSCVAIVQPREPAARYLMSADCSFFNDWVVGSGVSNNKFTTAHEEATIPVPNMYTGWMKKNVQDGIHDVPVQSSRETLNTVNENGNTALALLASAYGNSSDSEEDQIAIDSHESNVINTASESLLSHTQDSNASSMTALDRGDDIPLNSASCEDFMHRRFECNLSHQSLDHSGVTFENTRMVPSSSSNCSQDAHDAERSLSNKSLVPFDNKNASMVLQSDEDSSRMHVFCLEHAAEAEQQLRPIGGAHIFLLCHPDYPKIEAEAKMVAEDLGIDYMWKNIEYRHASKEDEERIQSALDSEEAIPGNGDWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYYAFGCSSPTSSPVEPKVYQRRVNRQKKVVAGKWCGKVWMSNQVHPLLAKRDSEDFEDEKLLLGWILPDEKIERSEITPKSETTSRKSGKKRKMTAENGRTRKGSYAKKNVVSDNSTEDKPNSKPRRILRSKKARHVERDRAALRGDYSPPYHHRKPISKQTNCTESDAVSDDTLDDDDHMQHRRNANVVKAKFIDNDVVSNDTVDYDSDWQQREELSSKEVEDTERDAISEDSLDVGSLQLHRKTSKGKQAKYISEEDIISDDQMESRFQKRQRRIPKSSQGKYLTGKDIISDDQLELKMQKQQRRNPKSRQAKYPNEEDIVSDDQLEVHYRRYQRRTPKGRRAKCVAGEDEMSDDQLEDHCQKQQTSFSRKRQNKGMDREVKNVMSDDQLGDHFLKQQRRFPKSKQNKHSDKGVTDDSAENISHLLHKTPKRKQAKCMDEDDMNSDDEMEDDQQLRRTLRSKQSKPKTLQQMKQANSLQVKNQASRSIKRGSRMVVKSKAPQQIKQRNKQASNSQEFSLHMEEEEEGGPSTRLRKRATKAQESEGKSKDKQTKKKVKSAAAAKVSVGHAKTKDGEAEYHCDIDGCTMSFGSKQELLHHKRNICPVKGCGKKFFSHKYLVQHRRVHEDERPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSAKKSRQ 1126
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01927 1126 ProSitePatterns Zinc finger C2H2 type domain signature. 1095 1119 IPR013087 -
Pumo10g01927 1126 PANTHER ZINC FINGER PROTEIN ZIC AND GLI 822 1118 - -
Pumo10g01927 1126 MobiDBLite consensus disorder prediction 636 663 - -
Pumo10g01927 1126 MobiDBLite consensus disorder prediction 506 610 - -
Pumo10g01927 1126 FunFam Probable lysine-specific demethylase ELF6 1060 1089 - -
Pumo10g01927 1126 ProSitePatterns Zinc finger C2H2 type domain signature. 1035 1057 IPR013087 -
Pumo10g01927 1126 ProSiteProfiles Zinc finger C2H2 type domain profile. 1063 1092 IPR013087 -
Pumo10g01927 1126 MobiDBLite consensus disorder prediction 839 872 - -
Pumo10g01927 1126 SMART c2h2final6 1033 1057 IPR013087 -
Pumo10g01927 1126 SMART c2h2final6 1093 1119 IPR013087 -
Pumo10g01927 1126 SMART c2h2final6 1063 1087 IPR013087 -
Pumo10g01927 1126 SMART c2h2final6 1010 1032 IPR013087 -
Pumo10g01927 1126 MobiDBLite consensus disorder prediction 896 921 - -
Pumo10g01927 1126 SUPERFAMILY beta-beta-alpha zinc fingers 1049 1091 IPR036236 -
Pumo10g01927 1126 MobiDBLite consensus disorder prediction 721 735 - -
Pumo10g01927 1126 MobiDBLite consensus disorder prediction 638 663 - -
Pumo10g01927 1126 MobiDBLite consensus disorder prediction 506 534 - -
Pumo10g01927 1126 ProSitePatterns Zinc finger C2H2 type domain signature. 1065 1087 IPR013087 -
Pumo10g01927 1126 ProSiteProfiles Zinc finger C2H2 type domain profile. 1093 1124 IPR013087 -
Pumo10g01927 1126 FunFam Probable lysine-specific demethylase ELF6 1090 1119 - -
Pumo10g01927 1126 SUPERFAMILY beta-beta-alpha zinc fingers 1081 1115 IPR036236 -
Pumo10g01927 1126 Gene3D Classic Zinc Finger 977 1032 - -
Pumo10g01927 1126 ProSiteProfiles Zinc finger C2H2 type domain profile. 1033 1062 IPR013087 -
Pumo10g01927 1126 Gene3D Classic Zinc Finger 1062 1090 - -
Pumo10g01927 1126 Gene3D Classic Zinc Finger 1091 1125 - -
Pumo10g01927 1126 Gene3D Classic Zinc Finger 1033 1061 - -
Pumo10g01927 1126 MobiDBLite consensus disorder prediction 931 949 - -
Pumo10g01927 1126 MobiDBLite consensus disorder prediction 742 765 - -
Pumo10g01927 1126 MobiDBLite consensus disorder prediction 565 584 - -
Pumo10g01927 1126 MobiDBLite consensus disorder prediction 950 988 - -
Pumo10g01927 1126 MobiDBLite consensus disorder prediction 774 831 - -
Pumo10g01927 1126 MobiDBLite consensus disorder prediction 695 996 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pumo10g01927 Pumo-Chr10 25431064 25436160 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01927 306 549 C2H2 Transcription Factor Family AT3G48430 55.159 5.70e-77 273
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo10g01927 None None None
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01927 - - gmx:100775271 1858.96