Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo10g01927 | ATGAGGGAATGCATTCCTCAAAAGGTTTTGTTTCTGATGATCTGGTATTCAACAGGAGTCATGGAATCAAGCAAGAAAAAAGGTTTCTATTCTGTGAAAGACAAGTTTACTACGTTGTATGAAAGGAACAGGATTTCCTCTTTTGATGTAAATGGTAACATAAGCACTTCAAGTTCTAAGCCACTTCTAAGAGACACTGAAAGAGAAACTAGTCAAGGAGATGGGCTGTCAGATCAGAGACTGTTTTCATGTGTCACATGTGGAATAATAAGCTTTTCCTGTGTTGCTATTGTACAGCCTAGAGAACCAGCAGCTAGATATCTTATGTCAGCTGATTGCAGCTTCTTTAATGATTGGGTTGTTGGTTCTGGAGTATCTAACAATAAATTTACTACTGCCCATGAAGAAGCAACTATTCCTGTGCCAAATATGTATACAGGATGGATGAAAAAGAATGTCCAAGATGGTATACATGATGTTCCTGTTCAATCTTCTCGGGAGACTTTAAATACTGTAAATGAAAATGGCAATACAGCTCTTGCATTATTGGCTTCAGCATATGGAAATTCTTCGGACTCTGAGGAAGATCAAATTGCGATTGATAGTCATGAATCAAATGTGATAAACACTGCTTCAGAAAGTTTACTTTCTCATACTCAAGATTCCAATGCTAGTTCCATGACTGCACTTGATAGGGGAGATGATATTCCTTTAAATAGTGCCAGTTGTGAGGATTTTATGCATCGTAGATTTGAGTGTAATTTGAGTCATCAGTCTTTAGACCACTCAGGGGTTACATTTGAAAATACAAGGATGGTACCTAGTTCCTCCTCTAATTGTTCCCAAGATGCTCATGATGCTGAAAGGTCATTGTCTAACAAGTCTTTGGTTCCCTTTGATAATAAAAATGCTTCAATGGTGCTACAATCTGATGAAGACTCATCCAGAATGCATGTTTTTTGTCTAGAGCATGCTGCAGAAGCAGAGCAGCAACTTCGCCCAATAGGCGGAGCCCACATATTTCTCCTATGTCATCCAGATTATCCCAAGATAGAGGCTGAAGCAAAAATGGTGGCAGAAGATTTGGGGATTGATTACATGTGGAAGAATATTGAATACAGGCATGCTTCCAAGGAAGATGAGGAGAGGATCCAGTCGGCTCTGGATAGCGAGGAAGCTATTCCTGGGAATGGTGACTGGGCTGTAAAGCTAGGAATCAATCTCTTTTATAGTGCAAATCTTAGCCGCTCTCCTCTTTATAGTAAGCAGATGCCTTACAATTCTGTTATATACTATGCATTTGGTTGTAGCTCTCCAACAAGCTCACCTGTAGAGCCAAAGGTCTACCAAAGAAGGGTCAACAGGCAGAAAAAGGTTGTTGCTGGGAAATGGTGTGGTAAAGTTTGGATGTCCAATCAGGTCCATCCCCTTTTAGCAAAAAGAGATTCTGAAGATTTTGAGGATGAGAAACTCTTACTTGGGTGGATATTACCTGATGAGAAAATTGAGAGATCAGAAATTACTCCCAAAAGCGAAACTACTAGCAGAAAATCAGGTAAGAAAAGGAAAATGACAGCAGAGAATGGACGAACCAGGAAAGGAAGTTATGCTAAGAAAAATGTAGTTTCAGATAATTCCACTGAAGATAAACCCAACTCAAAGCCAAGGAGGATTCTTAGAAGTAAGAAAGCCAGGCATGTTGAGAGAGACCGTGCTGCTTTGAGAGGGGATTATTCTCCTCCATATCATCATAGAAAACCTATAAGCAAGCAAACAAACTGCACTGAAAGTGATGCAGTTTCTGATGATACGCTTGATGATGATGATCACATGCAGCATAGGAGGAATGCTAATGTTGTAAAGGCTAAATTTATTGACAATGATGTGGTTTCAAATGATACAGTGGACTATGATTCTGATTGGCAGCAGAGGGAAGAACTTAGCAGCAAGGAAGTTGAAGATACAGAGAGAGATGCAATTTCAGAGGATTCTTTGGATGTTGGTTCTCTTCAGCTGCATAGGAAGACTTCCAAAGGCAAGCAAGCCAAATACATTAGTGAAGAAGACATAATTTCTGATGATCAAATGGAGAGTCGTTTTCAGAAGCGACAAAGGAGAATTCCTAAAAGCAGTCAAGGCAAATACCTTACTGGAAAAGATATAATTTCTGATGACCAACTAGAGCTGAAAATGCAGAAGCAGCAACGGAGGAATCCTAAAAGCAGGCAAGCCAAATACCCCAATGAAGAGGATATTGTATCAGATGACCAATTGGAGGTCCATTATCGGAGGTATCAAAGAAGGACTCCTAAAGGCAGGCGGGCCAAATGTGTAGCAGGGGAAGATGAAATGTCTGATGACCAATTGGAGGATCATTGTCAGAAGCAGCAAACAAGTTTCTCTAGGAAAAGGCAAAACAAAGGCATGGATAGAGAAGTTAAAAATGTAATGTCTGATGACCAATTGGGGGATCATTTTCTGAAGCAGCAGAGAAGATTTCCTAAGAGCAAGCAAAACAAACACTCTGATAAAGGAGTTACGGATGACTCGGCTGAAAATATTTCTCATCTGCTGCATAAAACTCCTAAAAGGAAGCAAGCTAAATGCATGGACGAAGATGATATGAATTCAGATGATGAAATGGAAGATGATCAGCAGCTGAGGAGGACTCTTCGAAGTAAACAATCTAAACCAAAGACACTTCAACAGATGAAACAAGCCAATTCCCTGCAAGTGAAAAACCAGGCATCTCGGTCCATAAAACGGGGTTCTCGGATGGTTGTAAAATCAAAGGCTCCTCAGCAAATAAAACAGCGGAATAAGCAAGCCAGTAACTCCCAAGAGTTTAGTTTACATATGGAAGAGGAGGAAGAAGGTGGACCTAGCACCCGCCTTAGGAAGAGAGCCACAAAAGCTCAGGAATCTGAAGGAAAGTCGAAAGACAAGCAAACAAAAAAGAAGGTCAAGAGTGCTGCAGCTGCAAAGGTTTCAGTTGGTCATGCCAAAACGAAGGATGGGGAAGCAGAATATCATTGTGACATTGATGGGTGCACTATGAGCTTTGGGTCGAAACAGGAGCTTCTGCATCATAAGAGAAATATCTGCCCTGTAAAAGGGTGTGGGAAGAAGTTTTTCTCACACAAGTATCTGGTGCAGCACCGACGAGTTCATGAGGACGAGCGCCCCTTGAAGTGCCCTTGGAAGGGATGCAAGATGACTTTCAAGTGGGCATGGGCTCGTACTGAGCACATTCGAGTCCACACTGGTGCACGGCCTTATGTATGTGCTGAGCCAGGTTGTGGACAAACATTCAGATTTGTGTCTGATTTCAGTCGTCATAAGCGAAAGACTGGGCATTCAGCAAAGAAGAGTCGTCAATAG | 3381 | 0.4135 | MRECIPQKVLFLMIWYSTGVMESSKKKGFYSVKDKFTTLYERNRISSFDVNGNISTSSSKPLLRDTERETSQGDGLSDQRLFSCVTCGIISFSCVAIVQPREPAARYLMSADCSFFNDWVVGSGVSNNKFTTAHEEATIPVPNMYTGWMKKNVQDGIHDVPVQSSRETLNTVNENGNTALALLASAYGNSSDSEEDQIAIDSHESNVINTASESLLSHTQDSNASSMTALDRGDDIPLNSASCEDFMHRRFECNLSHQSLDHSGVTFENTRMVPSSSSNCSQDAHDAERSLSNKSLVPFDNKNASMVLQSDEDSSRMHVFCLEHAAEAEQQLRPIGGAHIFLLCHPDYPKIEAEAKMVAEDLGIDYMWKNIEYRHASKEDEERIQSALDSEEAIPGNGDWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYYAFGCSSPTSSPVEPKVYQRRVNRQKKVVAGKWCGKVWMSNQVHPLLAKRDSEDFEDEKLLLGWILPDEKIERSEITPKSETTSRKSGKKRKMTAENGRTRKGSYAKKNVVSDNSTEDKPNSKPRRILRSKKARHVERDRAALRGDYSPPYHHRKPISKQTNCTESDAVSDDTLDDDDHMQHRRNANVVKAKFIDNDVVSNDTVDYDSDWQQREELSSKEVEDTERDAISEDSLDVGSLQLHRKTSKGKQAKYISEEDIISDDQMESRFQKRQRRIPKSSQGKYLTGKDIISDDQLELKMQKQQRRNPKSRQAKYPNEEDIVSDDQLEVHYRRYQRRTPKGRRAKCVAGEDEMSDDQLEDHCQKQQTSFSRKRQNKGMDREVKNVMSDDQLGDHFLKQQRRFPKSKQNKHSDKGVTDDSAENISHLLHKTPKRKQAKCMDEDDMNSDDEMEDDQQLRRTLRSKQSKPKTLQQMKQANSLQVKNQASRSIKRGSRMVVKSKAPQQIKQRNKQASNSQEFSLHMEEEEEGGPSTRLRKRATKAQESEGKSKDKQTKKKVKSAAAAKVSVGHAKTKDGEAEYHCDIDGCTMSFGSKQELLHHKRNICPVKGCGKKFFSHKYLVQHRRVHEDERPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSAKKSRQ | 1126 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo10g01927 | 1126 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 1095 | 1119 | IPR013087 | - | |
Pumo10g01927 | 1126 | PANTHER | ZINC FINGER PROTEIN ZIC AND GLI | 822 | 1118 | - | - | |
Pumo10g01927 | 1126 | MobiDBLite | consensus disorder prediction | 636 | 663 | - | - | |
Pumo10g01927 | 1126 | MobiDBLite | consensus disorder prediction | 506 | 610 | - | - | |
Pumo10g01927 | 1126 | FunFam | Probable lysine-specific demethylase ELF6 | 1060 | 1089 | - | - | |
Pumo10g01927 | 1126 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 1035 | 1057 | IPR013087 | - | |
Pumo10g01927 | 1126 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 1063 | 1092 | IPR013087 | - | |
Pumo10g01927 | 1126 | MobiDBLite | consensus disorder prediction | 839 | 872 | - | - | |
Pumo10g01927 | 1126 | SMART | c2h2final6 | 1033 | 1057 | IPR013087 | - | |
Pumo10g01927 | 1126 | SMART | c2h2final6 | 1093 | 1119 | IPR013087 | - | |
Pumo10g01927 | 1126 | SMART | c2h2final6 | 1063 | 1087 | IPR013087 | - | |
Pumo10g01927 | 1126 | SMART | c2h2final6 | 1010 | 1032 | IPR013087 | - | |
Pumo10g01927 | 1126 | MobiDBLite | consensus disorder prediction | 896 | 921 | - | - | |
Pumo10g01927 | 1126 | SUPERFAMILY | beta-beta-alpha zinc fingers | 1049 | 1091 | IPR036236 | - | |
Pumo10g01927 | 1126 | MobiDBLite | consensus disorder prediction | 721 | 735 | - | - | |
Pumo10g01927 | 1126 | MobiDBLite | consensus disorder prediction | 638 | 663 | - | - | |
Pumo10g01927 | 1126 | MobiDBLite | consensus disorder prediction | 506 | 534 | - | - | |
Pumo10g01927 | 1126 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 1065 | 1087 | IPR013087 | - | |
Pumo10g01927 | 1126 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 1093 | 1124 | IPR013087 | - | |
Pumo10g01927 | 1126 | FunFam | Probable lysine-specific demethylase ELF6 | 1090 | 1119 | - | - | |
Pumo10g01927 | 1126 | SUPERFAMILY | beta-beta-alpha zinc fingers | 1081 | 1115 | IPR036236 | - | |
Pumo10g01927 | 1126 | Gene3D | Classic Zinc Finger | 977 | 1032 | - | - | |
Pumo10g01927 | 1126 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 1033 | 1062 | IPR013087 | - | |
Pumo10g01927 | 1126 | Gene3D | Classic Zinc Finger | 1062 | 1090 | - | - | |
Pumo10g01927 | 1126 | Gene3D | Classic Zinc Finger | 1091 | 1125 | - | - | |
Pumo10g01927 | 1126 | Gene3D | Classic Zinc Finger | 1033 | 1061 | - | - | |
Pumo10g01927 | 1126 | MobiDBLite | consensus disorder prediction | 931 | 949 | - | - | |
Pumo10g01927 | 1126 | MobiDBLite | consensus disorder prediction | 742 | 765 | - | - | |
Pumo10g01927 | 1126 | MobiDBLite | consensus disorder prediction | 565 | 584 | - | - | |
Pumo10g01927 | 1126 | MobiDBLite | consensus disorder prediction | 950 | 988 | - | - | |
Pumo10g01927 | 1126 | MobiDBLite | consensus disorder prediction | 774 | 831 | - | - | |
Pumo10g01927 | 1126 | MobiDBLite | consensus disorder prediction | 695 | 996 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo10g01927 | Pumo-Chr10 | 25431064 | 25436160 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo10g01927 | 306 | 549 | C2H2 Transcription Factor Family | AT3G48430 | 55.159 | 5.70e-77 | 273 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Pumo10g01927 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo10g01927 | - | - | gmx:100775271 | 1858.96 |