Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01926 ATGGAGCCCATTGAATCCGAATCAGTTAGTTCCTCCACCAAGGACTTGCAATTGGGTGAACCTTCTTCCCCTGTTCACCCCCTCGATCACGATCGTCAGCCCTTAGATCTCAATCACGTTGCTCAGGTTGATGATGCACTTGGTGGGGAGCTTCAGGACAAGTTGGATTTGAAGGATGGGGGTGAGACTGAGACTAAAGGTTCGAACTTGGAAGATGGGGGTGAAAAATTGAGTGACGAAGGTGCTGCCCCAGAAGGTGGTAAGGGAGAAGAGTGTGATGATGGTGTTGTCGGTGATGATGGTGTTGTCGGTGATGATGTAGTTGTTGTTGCTGCTGCTGGTGGTGTTGTTCGTGATGATGTAGTTGTTGCTGCTGCCGATGATGATGGTGTTGTTTGTGATGATGTAGTTGTTGTTGTTGATGATGACGATGGTGTTGTTCGTGATGATGTAGTTGTTGTTGATGATGATGATGGTTGGAATGGTGGTGATGAGGGGTGTGATTGGATTGAGAATGTGAATGGGAGTGAGAGTGATAAGGTGGGTGGAGAAGTTGAGGGAGTGGAGAATAAGGATGAGAGGAGCAGTGGTAGAGCTCAACAGTACCCCTTGAGGCCTGAGGCTGAAGACTGTGCGTTTTATCTCAAAACTGGGACTTGCAAATTTGGATTCAATTGCAAGTTCAATCATCCGCTTAGGAGGAAAAACCAGGCTAAAAAAGAGAACGCGGGAGAAAGAGAAGAACATGCAGAAAGATCAGGCCAGACGGAATGCAAGTATTATTTAAGGTCTGGGGGGTGTAAGTTTGGAAAGGCTTGTAAGTTTAATCACACAAGAGGAAATTGTTCATCAGCATCCCCAACTGCAGAGCTTAACTTCCTTGGCCTGCCTATTCGTGTGGGAGAGAAAGAGTGCCACTATTACATGCGCACTGGTTCTTGTAAGTTTGGAGCAAACTGCAAGTTTAATCATCCTGATCCTACAGCTGGAGGAGGTGATTCTCCTTCCGGTTATGGTAATGGAAGTTCTATTTCGTTACAAGGTGTATCACAATCTTCTATATCCTCGTGGTCTTCTACTAGACCATTAAATGAATCTGCTGCTTTTGTGCCGGTGATACTTTCACCTAATCCAGGGGTTTCTCCCCAAAGTTCTGAATGGAATGGATATCAGGCACCTCTCTATCTATCTGAGAGGAATCTGCATCCACCTTCAACATATGTCATGAACAACCCAGCTATGGAAACAAATGTTTATATGCACCACCAAAAACAAATGCAGCAGGTTGAAGAGTTTCCAGAAAGGCCTGGTGAACCCGAATGCAGCTATTTCTTAAAAACTGGGGATTGCAAGTTTAAATCTAATTGTAAATTTCACCATCCAAAGAATCGGATTGCAAGATTGCCTCCATGCAACCTCAGTGACAAGGGTCTACCTTTGAGACCGGACCAGAATGTTTGCACGTATTACGGCCGTTACGGAATTTGCAAATTTGGACCAGCTTGTAAGTTCGACCACCCACCACCCTCAACTATGGCTGGACTTGATCAACAATCCTCGTACACAAACTCAGCTAGTGTTGATGTGGCTGAAAATGGAGGTGCCAATGATGGGAATCAGCAGTCTCTGTAA 1632 0.4534 MEPIESESVSSSTKDLQLGEPSSPVHPLDHDRQPLDLNHVAQVDDALGGELQDKLDLKDGGETETKGSNLEDGGEKLSDEGAAPEGGKGEECDDGVVGDDGVVGDDVVVVAAAGGVVRDDVVVAAADDDGVVCDDVVVVVDDDDGVVRDDVVVVDDDDGWNGGDEGCDWIENVNGSESDKVGGEVEGVENKDERSSGRAQQYPLRPEAEDCAFYLKTGTCKFGFNCKFNHPLRRKNQAKKENAGEREEHAERSGQTECKYYLRSGGCKFGKACKFNHTRGNCSSASPTAELNFLGLPIRVGEKECHYYMRTGSCKFGANCKFNHPDPTAGGGDSPSGYGNGSSISLQGVSQSSISSWSSTRPLNESAAFVPVILSPNPGVSPQSSEWNGYQAPLYLSERNLHPPSTYVMNNPAMETNVYMHHQKQMQQVEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRIARLPPCNLSDKGLPLRPDQNVCTYYGRYGICKFGPACKFDHPPPSTMAGLDQQSSYTNSASVDVAENGGANDGNQQSL 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01926 543 ProSiteProfiles Zinc finger C3H1-type profile. 435 463 IPR000571 GO:0046872
Pumo10g01926 543 MobiDBLite consensus disorder prediction 182 198 - -
Pumo10g01926 543 MobiDBLite consensus disorder prediction 49 95 - -
Pumo10g01926 543 SUPERFAMILY CCCH zinc finger 479 506 IPR036855 GO:0046872
Pumo10g01926 543 ProSiteProfiles Zinc finger C3H1-type profile. 481 509 IPR000571 GO:0046872
Pumo10g01926 543 Gene3D - 479 531 - -
Pumo10g01926 543 MobiDBLite consensus disorder prediction 513 543 - -
Pumo10g01926 543 ProSiteProfiles Zinc finger C3H1-type profile. 205 233 IPR000571 GO:0046872
Pumo10g01926 543 ProSiteProfiles Zinc finger C3H1-type profile. 252 280 IPR000571 GO:0046872
Pumo10g01926 543 MobiDBLite consensus disorder prediction 174 201 - -
Pumo10g01926 543 SMART c3hfinal6 205 232 IPR000571 GO:0046872
Pumo10g01926 543 SMART c3hfinal6 481 508 IPR000571 GO:0046872
Pumo10g01926 543 SMART c3hfinal6 301 326 IPR000571 GO:0046872
Pumo10g01926 543 SMART c3hfinal6 435 462 IPR000571 GO:0046872
Pumo10g01926 543 SMART c3hfinal6 252 279 IPR000571 GO:0046872
Pumo10g01926 543 MobiDBLite consensus disorder prediction 1 19 - -
Pumo10g01926 543 SUPERFAMILY CCCH zinc finger 204 233 IPR036855 GO:0046872
Pumo10g01926 543 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 209 231 IPR000571 GO:0046872
Pumo10g01926 543 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 255 277 IPR000571 GO:0046872
Pumo10g01926 543 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 484 508 IPR000571 GO:0046872
Pumo10g01926 543 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 302 325 IPR000571 GO:0046872
Pumo10g01926 543 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 437 462 IPR000571 GO:0046872
Pumo10g01926 543 Gene3D - 390 470 - -
Pumo10g01926 543 Gene3D - 180 241 - -
Pumo10g01926 543 SUPERFAMILY CCCH zinc finger 300 326 IPR036855 GO:0046872
Pumo10g01926 543 ProSiteProfiles Zinc finger C3H1-type profile. 299 327 IPR000571 GO:0046872
Pumo10g01926 543 Gene3D - 242 329 - -
Pumo10g01926 543 SUPERFAMILY CCCH zinc finger 440 464 IPR036855 GO:0046872
Pumo10g01926 543 PANTHER PROTEIN PHOSPHATASE RELATED 75 518 - -
Pumo10g01926 543 SUPERFAMILY CCCH zinc finger 255 280 IPR036855 GO:0046872
Pumo10g01926 543 MobiDBLite consensus disorder prediction 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01926 Pumo-Chr10 25400902 25405960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01926 431 530 C2H2 Transcription Factor Family AT3G02830 46.602 5.98e-22 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo10g01926 zf-CCCH 3.8e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01926 - - gmx:100809906 708.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01501 4 18966519 18970903 Pumo10g01926 10 25400902 25405960 ECH
Pumo10g01926 10 25400902 25405960 Pumo10g01926 10 25400902 25405960 ECH
Pumo4g01501 4 18966519 18970903 Pumo10g01926 10 25400902 25405960 PCT