Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01918 ATGGCGGCGGCAGCGGTGGCGGAGGCGAGGAAGGTCCCCCGGCCGGGCAAGGGCGGGTACGAAGCGCACGGCCTGAGCGAGGAGGAGGCGCGTGTACGCGCTATCGCGGAGATCGTGAGCTCCATGGTGGACCTCTCCCACCGAGGCCAGAACGTGGACCTCAACGCGCTCAAGTCCGCCGCGTGCCGCAAGTACGGCCTCTCGCGCGCGCCCAAGCTCGTCGAGATGATCGCCGCGCTCCCCGACGCCGAGCGCGATACGCTCCTCCCCAAGCTCCGCGCCAAGCCCGTCCGCACCGCCTCCGGAATCGCCGTCGTTGCCGTCATGTCCAAGCCGCACCGGTGTCCGCACATCGCCACCACCGGGAACATCTGCGTCTACTGCCCCGGGGGACCTGACTCCGACTTCGAGTACAGTACTCAGTCCTACACCGGTTATGAACCGACCAGCATGCGTGCAATTCGTGCGAGGTATAATCCATATGTCCAAGCGAGGAGCAGGATAGATCAGCTTAAGCGTTTGGGTCATAGTGTAGACAAGGCTGATTACCGTGATTACTTTATAAGAAATCTTCATGATGCTTTGTCTGGACACACGTCTGCCAATGTGGAAGAGGCAGTGGCTTACTCTGAGCATGGCGCAACCAAGTGTATTGGCATGACAATTGAAACGAGGCCAGATTATTGTCTTGGGCCTCACTTGCGCCAAATGCTTTCTTATGGTTGTACACGATTGGAGATTGGAGTCCAAAGCACATATGAGGATGTTGCTCGAGACACAAATAGAGGACACACTGTAGCTGCTGTAGCCGATTGTTTTTGCTTGGCTAAAGATGCTGGTTTCAAGGTTGTTGCTCACATGATGCCTGATCTTCCTAATGTTGGTGTTGAAAGGGACATGGAAAGTTTCCGGGAGTTTTTCGAGAGTCCCTTGTTTAGAGCAGATGGGCTTAAAATATATCCTACACTCGTAATTCGTGGAACTGGGCTTTATGAGCTCTGGAAAACTGGCAGGTATAGAAATTATCCACCTGAACAACTTGTGGACATCATAGCAAGGATCCTTGCAATGGTACCCCCGTGGACACGTGTTTATAGAGTTCAGCGAGATATTCCCATGCCTCTGGTTACCTCTGGGGTTGAGAAAGGAAATCTGAGGGAGCTAGCATTAGCTCGAATGGAAGACCTGGGATTGAAATGTCGTGATGTTCGGACCAGAGAAGCTGGAATCCAGGATATTCACCACCAAATTAAGCCAGAAGAGGTGGAGCTTGTTCGACGTGATTATATGGCAAATGAGGGTTGGGAAACATTTCTATCATATGAAGATACACGACAGGATATCCTTGTTGGTTTGTTGCGACTGCGAAAATGTGGCCGCAACACTACTTGTCCAGAGCTTATGGGGAAGTGTTCTATTGTTCGTGAACTCCACGTTTATGGAACTGCTGTACCAGTTCATGGACGGGATGCTGACAAGCTACAACACCAGGGTTATGGCACACTTTTAATGGAGGAGGCAGAGCGCATTGCTTGCAGAGAACACAGATCGACAAAAATAGCTGTAATTTCAGGGGTTGGCACACGCCATTATTACAGGAAACTGGGATATGAGCTTGAAGGACCTTACATGGTGAAATATCTAGTGAAATAA 1653 0.5154 MAAAAVAEARKVPRPGKGGYEAHGLSEEEARVRAIAEIVSSMVDLSHRGQNVDLNALKSAACRKYGLSRAPKLVEMIAALPDAERDTLLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKADYRDYFIRNLHDALSGHTSANVEEAVAYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDMESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIIARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMEDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYMANEGWETFLSYEDTRQDILVGLLRLRKCGRNTTCPELMGKCSIVRELHVYGTAVPVHGRDADKLQHQGYGTLLMEEAERIACREHRSTKIAVISGVGTRHYYRKLGYELEGPYMVKYLVK 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01918 550 SMART MiaB 105 353 IPR006638 GO:0003824|GO:0051536
Pumo10g01918 550 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 357 544 IPR016181 -
Pumo10g01918 550 SFLD Radical SAM 53 548 IPR007197 GO:0003824|GO:0051536
Pumo10g01918 550 SFLD ELP3-like 53 548 IPR034687 -
Pumo10g01918 550 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 398 550 IPR000182 GO:0016747
Pumo10g01918 550 FunFam Elongator complex protein 3 397 549 - -
Pumo10g01918 550 PANTHER HISTONE ACETYLTRANSFERASE-RELATED 15 548 IPR039661 -
Pumo10g01918 550 Pfam Radical_SAM C-terminal domain 315 394 IPR032432 -
Pumo10g01918 550 PIRSF HAT_Elp3 20 549 IPR034687 -
Pumo10g01918 550 Pfam Acetyltransferase (GNAT) family 401 537 IPR000182 GO:0016747
Pumo10g01918 550 NCBIfam tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 50 548 IPR034687 -
Pumo10g01918 550 Pfam Radical SAM superfamily 124 297 IPR007197 GO:0003824|GO:0051536
Pumo10g01918 550 Gene3D - 400 549 - -
Pumo10g01918 550 SUPERFAMILY Radical SAM enzymes 214 360 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Pumo10g01918 Radical_SAM 1.4e-11 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01918 K07739 - gmx:100818764 1090.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01918 10 25305290 25309836 Pumo10g01918 10 25305290 25309836 ECH