Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01900 ATGCTCGACCACGTTAACGTTAACGTCAACGCCGATTCACGCGCTCGCCGAGTCGAAGTGGTTCAGTCCGACTCGGCCGCGATTCTCTTCTCCTCGGGCACCACGGGGCGCGTGAAGGGCGTGCTCCTCACGCACCGCAACTTCATCGCGCTCATCGGAGGGTTCTGCCACCTCCGGAACGTGGTCGACGGCGACCCGCACCCGGTGTCGCTCTTCACGCTGCCGCTGTTCCACGTGTTCGGCTTCTTCATGCTGGTTAGGGCAATCGCCATCGGGGAGACGCTCGTCTTCATGCAGAGGTTCGATTTCGAAGGGATGCTCAAGGCCGTCGAGAGGTATAAAATAACCTACATGCCGGTGTCGCCGCCGCTCGTGGTGGCGCTGGCGAAGTCGGAGCTCGTGAAGAAATACGATCTCAGCTCGCTCCGGTTTTTGGGTAGCGGCGGCGCGCCGCTCGGCAAGGAGGTCGCCGACGACTTCAAAGCCAAATTCCCCAACGTGGAAATTGGGCAGGGCTATGGTTTGACTGAAAGTGGGGGAGGGGCAGCTAGAGTGTTGGGGCCTGATGAGGCTAAGCGCCATGGTTCTGTGGGTCGACTAGCAGAAAATATGGAGGCCAAGATAGTGGACCCTGTAACTGGAGAGGCATTACTTCCTGGCCAAAAAGGAGAGCTGTGGTTGCGAGGTCCAACAATCATGAAAGGTTATGTAGGAGATGAGAAGGCGACAGCTGAAACATTGGATTCAGAGGGATGGCTGAAGACTGGCGATCTTTGTTATTTTGACTCTGATGGTTTCCTCTACATTGTAGATAGGCTGAAGGAATTGATCAAATACAAAGCTTATCAGGTTCCCCCTGCTGAATTGGAACATATACTTCACACCCATCCTGAAATTGCTGATGCTGCAGTAGTTCCATATCCTGATGAAGATGCAGGACAGATTCCAATGGCCTTTGTAGTAAGAAAACCTGGAAGCAACATCACTGCAGATCAGGTCATGGAGTTTGTGGCAAAGCAGGTTTCACCATACAAGAAGATACGACGAGTTTCTTTTATCAAATCTATCCCAAAATCTCCGGCTGGCAAAATTTTGAGAAGAGAATTAGTTGATTATGCTCTATCTAGTGGTTCATCCAAATTGTGA 1146 0.5209 MLDHVNVNVNADSRARRVEVVQSDSAAILFSSGTTGRVKGVLLTHRNFIALIGGFCHLRNVVDGDPHPVSLFTLPLFHVFGFFMLVRAIAIGETLVFMQRFDFEGMLKAVERYKITYMPVSPPLVVALAKSELVKKYDLSSLRFLGSGGAPLGKEVADDFKAKFPNVEIGQGYGLTESGGGAARVLGPDEAKRHGSVGRLAENMEAKIVDPVTGEALLPGQKGELWLRGPTIMKGYVGDEKATAETLDSEGWLKTGDLCYFDSDGFLYIVDRLKELIKYKAYQVPPAELEHILHTHPEIADAAVVPYPDEDAGQIPMAFVVRKPGSNITADQVMEFVAKQVSPYKKIRRVSFIKSIPKSPAGKILRRELVDYALSSGSSKL 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01900 381 CDD 4CL 15 369 - -
Pumo10g01900 381 SUPERFAMILY Acetyl-CoA synthetase-like 13 374 - -
Pumo10g01900 381 FunFam 4-coumarate--CoA ligase 2 275 376 - -
Pumo10g01900 381 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 16 371 - -
Pumo10g01900 381 Pfam AMP-binding enzyme 17 279 IPR000873 -
Pumo10g01900 381 Gene3D - 275 375 IPR045851 -
Pumo10g01900 381 Pfam AMP-binding enzyme C-terminal domain 288 363 IPR025110 -
Pumo10g01900 381 Gene3D - 2 274 IPR042099 -
Pumo10g01900 381 ProSitePatterns Putative AMP-binding domain signature. 28 39 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01900 Pumo-Chr10 25075452 25080157 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01900 2 381 Monolignol Biosynthesis Gene Families AT5G63380 68.504 0.0 541
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01900 K01904 - gmx:100777435 705.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01900 10 25075452 25080157 Pumo10g01900 10 25075452 25080157 ECH