Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01894 ATGTCCGCTCTCACCTCACTCTCCCTCTCTCTCCGCACCCTCTCCCTCCGCCCCAAACCAGCAACACTTTCCGCTTCACTTTCTGCACTCCCAGGAAGTAGCGATGGATCTAAAACCAAAGCACCTCGCAAAAGAGCGAGGAGAATAGAAGGCCCTAGAAAAAGCATGGAGGACTCTGTTCAACGCAAGATGGAGCAGTTCTACGAGGGCGCCGACGGGCCTCCGCTTCGCGTTCTCCCCATTGGCGGTTTGGGCGAGATTGGGATGAATTGCATGCTCGTCGGGAACCATGACCGTTACATCCTCATTGATGCTGGTGTTATGTTTCCAGACTATGATGAACTTGGAGTTCAAAAGATTATACCTGATACCACGTTTATAACAAAGTGGAGCCACAAGATTGAAGCGCTTGTCATAACGCATGGTCATGAAGATCATATTGGTGCGTTGCCTTGGGTCATCCCGGCATTGGATTCCAATACTCCAATTTTTGCATCTTCCTTTACAATGGAGCTTATAAAAAAACGTTTGAAGGAACATGGTATTTTTGTTCCATCTAGACTGAAAGTATTTAGAACAAGGAAGAAGTTTGTGGCTGGGCCATTTGAGATAGAACCCATCAGGGTGACCCATTCTATTCCTGATTGTTGTGGACTAGTTCTTCGCTGTTCTGATGGTACTATTCTTCACACTGGGGACTGGAAGATTGATGAGACACCACTAGATGGGAAAGTTTTTGATCGTGAAGCTTTAGAGGAACTCTCTAAAGAAGGAGTAACATTGATGATGAGTGATTCAACAAATGTACTCTCACCTGGTAGGACAATCAGTGAATCTGTTGTGGCAGATGCATTGTTGAGACATATTTCAGCTTCTAAAGGAAGGGTTATTACTACCCAATTTGCATCAAATCTACATCGGCTTGGAAGTGTGAAAGCTGCTGCTGATTTAACTGGAAGAAAGTTGGTATTTGTTGGCATGTCTTTAAGGACGTATTTAGATGCAGCTTGGAAGGATGGAAAGGCTCCAATTGATCCATCCACTCTGGTGAAAGCAGAGGATATTGATGCTTATGCTCCAAAGGATCTGCTAATTGTAACAACAGGTTCTCAAGCAGAACCACGTGCTGCTTTGAACCTTGCATCTTACGGAAGTAGTCATGCTTTCAAACTAACCAACGAAGATCTTGTTTTGTATTCTGCTAAGGTTATCCCTGGTAATGAGTCTCGTGTGATGAAAATGCTAAACCGCATATCGGAGATTGGATCAACAATAGTTATGGGAAAAAATGAAGGTCTTCACACATCTGGTCATGCATATCGTGGGGAATTGGAAGAAGTACTTAGAATAGTGAAGCCACAGCATTTTCTTCCCATCCATGGAGAACTTTTGTTCCTGAAGGAACATGAATTACTTGGAAAATCAACTGGCGTTCGACACACTGCTGTTATTAAGAACGGAGAGATGCTTGGTGTTTCACATTTGAGAAATAGAAGAGTCCTTTCTAATGGTTTCATTTCCCTTGGAAAAGAGAATTTACAGTTGAAATATAGTGACGGTGATAGAGCATTTGGTACATCTAGTGAACTCTTCATTGATGAAAGATTGAGAATTGCATTAGATGGCATCATTGTCATTAGCATGGAAATATTTCGCCCTAAAACTTTAGATAGTTTGGCTGAAAACACCATAAAAGGAAAGATAAGGATTACCACAAGATGCTTATGGCTTGACAAAGGGAAGCTGATGGATGCACTCTACAAAGCTGCCCGTGCAGCTCTTTCAAGCTGCCCTGTAAAGAGTCCACTGGCTCACATCGAAAGAATCGTGTCTGAGGTATTGAGGAAGATGGTGAGGAAGTACAGTGGTAAAAGGCCCGAAGTTATTGCCATTGCCATAGAAAAACCTGCAGCCATTCTTGCTGATGAGATGATAAACACAAAATTGTCTGGCAAATCCCATGTGGGTCTTGAAATATCAACATTAAGTAAAGCAGTGGATGGACATGGGAAGGGAAATCAGTCCACCACACTGCAAGTTAAAGATGATAGTATTGATAATGCAAGTGGAGCTGAGGGTGATTTATCCGAGGAAGACAACACTGCAAGTGGAGCTAAGGGTTATTTATCTGAGGAAGACAACACTGCAAGTGGAGCCAAGGGTGATTTATCTGAGTCAGAGGATTCAGATGAATTTTGGAAACCATTCATTACATCATTACCAGTTGAGAAGTCAATCGGTGCTGACAATAATTATGTTTCACAAAAGGAGCAAAAGTCCAATTTGAAGAAAGATGATTCTGAAGACATTGGTGAAGCCAAGTCAGAAGAAACATCTAATTCTGAACCCAAGTCTTCAAAATCAGTTAAGAGAAATAAATGGAAAACTGAGGAAGTTAAGAAGCTGATTGGTATGCGCGGGGAACTAAGTGACAGATTTCAAGTTGTGAAGGGAAGGATGGCCCTCTGGGAAGAGATTTCTCAAAAATTGTTGGCTGATGGGATCAGCAGAAGTCCTGGACAGTGCAAATCTCTGTGGACATCTTTGGTAGTCAAATATGAGGGGATCAAGAATGAGGACAGGAAGAAAAGTTGGCCATACATAGAGGATATGGAAAGGATAATGTCTGATAAAGAAGCCCCTGCAACAAAATGA 2655 0.4237 MSALTSLSLSLRTLSLRPKPATLSASLSALPGSSDGSKTKAPRKRARRIEGPRKSMEDSVQRKMEQFYEGADGPPLRVLPIGGLGEIGMNCMLVGNHDRYILIDAGVMFPDYDELGVQKIIPDTTFITKWSHKIEALVITHGHEDHIGALPWVIPALDSNTPIFASSFTMELIKKRLKEHGIFVPSRLKVFRTRKKFVAGPFEIEPIRVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTISESVVADALLRHISASKGRVITTQFASNLHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHAFKLTNEDLVLYSAKVIPGNESRVMKMLNRISEIGSTIVMGKNEGLHTSGHAYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGVRHTAVIKNGEMLGVSHLRNRRVLSNGFISLGKENLQLKYSDGDRAFGTSSELFIDERLRIALDGIIVISMEIFRPKTLDSLAENTIKGKIRITTRCLWLDKGKLMDALYKAARAALSSCPVKSPLAHIERIVSEVLRKMVRKYSGKRPEVIAIAIEKPAAILADEMINTKLSGKSHVGLEISTLSKAVDGHGKGNQSTTLQVKDDSIDNASGAEGDLSEEDNTASGAKGYLSEEDNTASGAKGDLSESEDSDEFWKPFITSLPVEKSIGADNNYVSQKEQKSNLKKDDSEDIGEAKSEETSNSEPKSSKSVKRNKWKTEEVKKLIGMRGELSDRFQVVKGRMALWEEISQKLLADGISRSPGQCKSLWTSLVVKYEGIKNEDRKKSWPYIEDMERIMSDKEAPATK 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01894 884 MobiDBLite consensus disorder prediction 758 792 - -
Pumo10g01894 884 CDD GT1 792 857 - -
Pumo10g01894 884 Gene3D - 80 492 IPR036866 -
Pumo10g01894 884 Pfam Myb/SANT-like DNA-binding domain 791 874 IPR044822 -
Pumo10g01894 884 Pfam Beta-lactamase superfamily domain 100 235 IPR001279 -
Pumo10g01894 884 MobiDBLite consensus disorder prediction 667 684 - -
Pumo10g01894 884 MobiDBLite consensus disorder prediction 749 792 - -
Pumo10g01894 884 Gene3D - 277 427 IPR042173 -
Pumo10g01894 884 MobiDBLite consensus disorder prediction 25 57 - -
Pumo10g01894 884 ProSiteProfiles Myb-like domain profile. 786 850 IPR001005 -
Pumo10g01894 884 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 433 464 IPR011108 -
Pumo10g01894 884 CDD RNaseJ_MBL-fold 79 490 - -
Pumo10g01894 884 SMART Lactamase_B_5a 88 285 IPR001279 -
Pumo10g01894 884 SUPERFAMILY Metallo-hydrolase/oxidoreductase 76 490 IPR036866 -
Pumo10g01894 884 Gene3D - 794 854 - -
Pumo10g01894 884 PANTHER RIBONUCLEASE J 1 884 - -
Pumo10g01894 884 MobiDBLite consensus disorder prediction 666 730 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01894 Pumo-Chr10 25001970 25010274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01894 793 878 Trihelix Transcription Factor Family AT2G38250 38.202 2.65e-13 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pumo10g01894 Lactamase_B_2 3e-09 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01894 - - gmx:100779771 1624.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01894 10 25001970 25010274 Pumo10g01894 10 25001970 25010274 ECH
Pumo4g01528 4 19182871 19188718 Pumo10g01894 10 25001970 25010274 PCT