Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01891 ATGGTTTCAACGAGACGCAACAGTGGATCTTTCTCCAACAGTAACAAGAGGCCTTCTTCTTCCGAAGACAAGACTCCCTCTCCTTCCCCTAAGCGCCAAAAGGTCGACTATGGTGCTGCCGCGTCGGAGAAACCGATGCCGGCGGCGGAAAATTCCAAGGAATTGGGCACGCCGGAGCCTCCCGCTGATCCCGGAGAATGCGGCCATCAGGACGCTCAGATCGCCGGAGCCGCCAGTCCCGACGACAAGGCCGAGGCCACTCCGCCGATCGCCGATGGTTCTACACCGACTGTGGTGGCTGATAAACCTAGGGGTTCGTTTTCTTCTTGGAGTGTATATCCGAAGCAAAACCCAAATTCTGAAGCTTCAGTTCCATGGTGCAAACTCTTGTCTCAGTCTGCGCAGAATCCAAATGTTTTAATTTGCACACCCAACTTTACTATTGGCTCAAGTAGGAGTTGCAATTTTCCGTTGAAGGATCAGACTATAAGTGCAAATTTGTGCAAGATCAAGCACACTCAGCGCGAGGGAAGTGATGTGGCTGTGCTAGAAAGTACGGGTAGCAAAGGATCAGTGGTAGTGAATGGGACGCTCGTCAAGAAGAGTACCAGCTGCGTGCTTAACTCAGGGGATGAGGTGGTTTTTGGTTTGCTGGGGAATCATTCTTATATTTTTCAGCAAACAAATCCTGAAGTTGCAGTTAAGGCTGCAGAAATTCAGGGTGGTGTCGGCAAGTTTTTTCAGATTGAGAGGAGGGCTGGAGACCCTTCAGCCGTGGCTGGAGCTTCTATTTTGGCTTCTCTTTCTAGCCTCAGACCGGATCTTACAAGATGGAAATCTCCATCTCAGACTGCCAGTAAACCTCAACAGGGTACTGATGTTTCTAGTCATTCTGTTCTCCCTGATGGTACAGAAACTGAGCTCGATGGCCTGGAAGGCAACTCAGCTCCAAATGTAGTGACTGATAAAGCTTCTGATGTTGGAGCAAGCGACAAGAATTCACCTATGGATTGCGATCCAGATGATGCAGGCACAGAGGCAGGCAATGTATTTGAAGAAAGAAATGGGACAAGGGATGCGCAAGCTGCATCGACTTCGGGTACTTCTGTACGCTGTGCAGTTTTTAAAGAAGATGTCCATGCTGCAATACTGGATGGGAAAGAAATAGAAGTGTCCTTTGACAACTTCTCGTACTACTTAAGTGAGAATACAAAAAATGTCCTAATTGCAGCTTGCTTTATACACCTGAAGCATAAAGAACATGCGAAGTACACCACAGATCTTGCAACCATAAACCCTCGTATTCTACTCTCAGGACCAGCAGGGTCAGAAATATATCAGGAGATGTTGGCAAAAGCACTTGCAAAATACTTTGGAGCTAAATTGCTCATATTTGATAGCCATTCGCTTTTGGGTGGTTTATCTTCCAAGGAAGCTGAGCTGCTCAAGGATGGTTTTAGTGCTGAGAAATCCTGTGGCTTTGCTAAACAAAGTCCTACAGCCACAGACATGGCTAGGAGCATGGATCCACCAGCTAGTGAACCAGATACACCTAACTCCTCAAATGCACCTACTCCATATGGCTTTGAGTCTCAACCTAAGTTGGAAGCTGATAATGTACCATCTACCTCTGGGACAGCTAAAAATTGTGTGTTTAAACTAGGTGACAGGGTAAAATATAGTTCATCTTCTGGGGGCTTGTATCAGCTTCAGACAATTTCTTCAAGGGGTCCAGCTAATGGAAGTCGGGGGAAGGTTGTCTTACTTTTTGATGATAATCCCTTGTCAAAAATTGGTGTAAGATTTGATAAACCCATACCTGATGGAGTTGATCTTGGAGGTTGCTGTGAGGGTGGTCAAGGATTTTTCTGCAATGTCACTGATCTTCGATTGGAAAACAGTGGCATTGAAGAACTCGACAAATTACTCATTAATACATTATTTGAGGTTGTGGTTAGTGAGAGCAGAAATGCACCTTTCATTTTGTTCATGAAAGATGCAGAGAAGTCTATAGTAGGAAATGGAGATCCATTTTCATTTAAAAGTAGGCTTGAAAATCTTCCGGACAATGTGGTGGTAATAGGTTCACACACTCACACTGACAGTCGAAAGGAGAAGTCACATCCTGGGGGTTTGCTTTTTACAAAGTTCGGCAGTAATCAGACTGCTCTTCTTGATTTGGCTTTCCCTGATAGTTTTGGAAGATTGCATGAGAGGGGAAAGGAGGTTCCAAAGCCAAACAAAACCTTAACTAAGCTTTTCCCAAATAAAGTGACAATTCACATGCCACAGGATGAGGCACTTCTAGCATCTTGGAAGCAGCAACTTGATCGAGATGTTGAGACTCTTAAAATTAAAGGAAATTTGCACAATTTGCGCACAGTTTTGAGCCGTTGTGGGATGGAATGTGAAGGACTTGAGACCTTGTGCATTAAGGATCAGACACTTAGTATTGAAAATGCAGAGAAGATAGTTGGTTGGGCTTTAAGCCACCATCTTATGCACAATGCTGAAACTGATCCTGATGCAAAGCCTGTGTTGTCTTGTGAGAGCATCCAGTATGGGATTGTGATCTTACAGGCTATCCAGAATGAGTCGAAAAGCCTGAAGAAGTCTCTTAAGGATGTTGTAACAGAAAATGAGTTTGAAAAGAGGCTTTTGGCTGATGTTATTCCACCTAACGACATTGGTGTTACTTTTGATGATATTGGAGCTCTTGAAAATGTCAAGGATACATTGAAGGAATTGGTTATGCTTCCTTTACAGAGGCCTGAGCTATTTTGCAAAGGGCAATTAACCAAGCCGTGCAAGGGCATCCTATTATTTGGTCCCCCTGGAACAGGTAAGACAATGCTTGCAAAGGCAGTTGCTACTGAAGCTGGTGCAAATTTCATCAACATTTCCATGTCAAGTATCACGTCTAAGTGGTTTGGTGAGGGTGAAAAATACGTGAAAGCTGTTTTTTCCCTGGCAAGTAAAATTGCTCCTAGCGTGATATTTGTTGACGAAGTTGATAGCATGTTGGGCAGGAGGGAAAATCCTGGGGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAACTGGGATGGCTTACGCACAAAGGATACTGAGAGAGTTCTTGTGCTTGCAGCCACTAATAGGCCTTTTGACCTAGATGAGGCTGTCATACGGAGGCTGCCTCGGAGATTAATGGTAAATTTGCCAGATGCTCCAAATAGAGCAAAAATATTGAAAGTTATACTGGCTAAAGAGGACTTGTCTTCTGATGTTAATATGGATGCAATTGCAAGTATGACTGATGGATATTCCGGAAGTGATCTTAAGAATTTGTGTGTAACTGCGGCACACCGTCCAATTAAAGAGATATTAGAAAAGGAAAAAAAGGAACAGGCTGCTGCTCTAGCAGAAGGGAGACCTGCTCCAGCATTAAGTGGAAGTGCAGATATCCGATCTTTAAACATGGAAGATTTCAAATATGCTCATCAACAGGTCTGTGCAAGTGTTTCCTCTGAATCCGTAAATATGACCGAGCTTCAACAATGGAATGAACTATATGGTGAAGGTGGTTCAAGAGTGAAAAAAGCATTAAGCTATTTCATGTGA 3612 0.4399 MVSTRRNSGSFSNSNKRPSSSEDKTPSPSPKRQKVDYGAAASEKPMPAAENSKELGTPEPPADPGECGHQDAQIAGAASPDDKAEATPPIADGSTPTVVADKPRGSFSSWSVYPKQNPNSEASVPWCKLLSQSAQNPNVLICTPNFTIGSSRSCNFPLKDQTISANLCKIKHTQREGSDVAVLESTGSKGSVVVNGTLVKKSTSCVLNSGDEVVFGLLGNHSYIFQQTNPEVAVKAAEIQGGVGKFFQIERRAGDPSAVAGASILASLSSLRPDLTRWKSPSQTASKPQQGTDVSSHSVLPDGTETELDGLEGNSAPNVVTDKASDVGASDKNSPMDCDPDDAGTEAGNVFEERNGTRDAQAASTSGTSVRCAVFKEDVHAAILDGKEIEVSFDNFSYYLSENTKNVLIAACFIHLKHKEHAKYTTDLATINPRILLSGPAGSEIYQEMLAKALAKYFGAKLLIFDSHSLLGGLSSKEAELLKDGFSAEKSCGFAKQSPTATDMARSMDPPASEPDTPNSSNAPTPYGFESQPKLEADNVPSTSGTAKNCVFKLGDRVKYSSSSGGLYQLQTISSRGPANGSRGKVVLLFDDNPLSKIGVRFDKPIPDGVDLGGCCEGGQGFFCNVTDLRLENSGIEELDKLLINTLFEVVVSESRNAPFILFMKDAEKSIVGNGDPFSFKSRLENLPDNVVVIGSHTHTDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHERGKEVPKPNKTLTKLFPNKVTIHMPQDEALLASWKQQLDRDVETLKIKGNLHNLRTVLSRCGMECEGLETLCIKDQTLSIENAEKIVGWALSHHLMHNAETDPDAKPVLSCESIQYGIVILQAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPNDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSSDVNMDAIASMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKEQAAALAEGRPAPALSGSADIRSLNMEDFKYAHQQVCASVSSESVNMTELQQWNELYGEGGSRVKKALSYFM 1203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01891 1203 Gene3D - 125 233 - -
Pumo10g01891 1203 ProSitePatterns AAA-protein family signature. 1042 1061 IPR003960 GO:0005524|GO:0016887
Pumo10g01891 1203 CDD RecA-like_ATAD1 902 1068 - -
Pumo10g01891 1203 MobiDBLite consensus disorder prediction 499 544 - -
Pumo10g01891 1203 Pfam ATPase family associated with various cellular activities (AAA) 939 1068 IPR003959 GO:0005524|GO:0016887
Pumo10g01891 1203 Gene3D - 1071 1165 - -
Pumo10g01891 1203 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 897 1073 - -
Pumo10g01891 1203 Pfam FHA domain 147 216 IPR000253 GO:0005515
Pumo10g01891 1203 MobiDBLite consensus disorder prediction 1 103 - -
Pumo10g01891 1203 Pfam AAA+ lid domain 1092 1127 IPR041569 -
Pumo10g01891 1203 SUPERFAMILY SMAD/FHA domain 124 219 IPR008984 GO:0005515
Pumo10g01891 1203 MobiDBLite consensus disorder prediction 513 528 - -
Pumo10g01891 1203 MobiDBLite consensus disorder prediction 1 26 - -
Pumo10g01891 1203 Coils Coil 859 879 - -
Pumo10g01891 1203 SMART AAA_5 935 1072 IPR003593 GO:0016887
Pumo10g01891 1203 MobiDBLite consensus disorder prediction 276 302 - -
Pumo10g01891 1203 Gene3D - 897 1178 IPR027417 -
Pumo10g01891 1203 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 898 1176 IPR027417 -
Pumo10g01891 1203 CDD FHA 146 226 - -
Pumo10g01891 1203 MobiDBLite consensus disorder prediction 276 347 - -
Pumo10g01891 1203 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 375 1202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01891 Pumo-Chr10 24958684 24970721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01891 898 1150 Calmodulin-binding Proteins AT3G56690 40.385 1.10e-42 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01891 - - gmx:100780098 2188.3