Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01890 ATGGCAGTCACATTCTACGACCTTAGCTCTGCCTCTGGGTTGAAGAAGCTTGATGAGTACCTTCTCCCACGCAGTTATATCACTGGGTACCAAGCTTCAAAGGATGATCTTACTGTTTATGCAGCTTTGCCAACTGCTCCATCAGATGAATGTGTGAATGTGTCTAGGTGGTACAAGCACATTGATGCTTTGTTGAGAGTGTCTGGTGTTTCTGGTGAGGGATCTGGTGTCACTGTTGAGGGATCTCTTGTTGCAGAGCCTGTTGCAACTCCCCCAGCTGCTGACACAAAGGCTGCCGCTGCTGATGATGATGACGATGATGATGTGGATTTGTTTGGTGAAGAGACCGAGGAAGAGAAGAAAGCAGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGCAAAAAAGAAAGAATCTGGAAAATCGTCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACCGACATGAAGAAGCTTGAAGAATCAGTGAGATCTGTTCAGATGGAAGGATTGCTTTGGGGTGCATCCAAACTTGTTCCTGTTGGGTACGGTATCAAGAAACTGCAAATTATGCTTACCATTGTGGATGACCTAGTTTCTGTTGATACTCTTATTGAGGAACATCTCACAGTTGAGCCCATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATATGAAAAACGAGAGCGAAAACTGAGCATGGAATCGAGCAGTGATTCATTCGTTCGTTCAATTTCCAAGACTCCGAAACCGACACCATCAATCTTAGAAGCAGCAATAAGAATGAATGATCAATCCAAGAATGTTGCTGCATCATCTTTGTTTGGTCATTCGGCCCCACAACCACACCACCCTAACCCCATTCAGCAGTGGAACCATCCAAACCCTTTACTCTCCCAGCCACAGTCACACCCTCAAACCCAATTCCCTGGTCTCTTTCAATTTTCAGAGCCCCAAAACCAGGTCTTTGCACAAGCTCAATTTGCACAGGCACAGTTGCAGTCTCGTGCTCATCCACAACCTCAAACTCAGCCTCTTGCCCACTTGCATAATGTAAATACTAATGCTGCTAATGGTGTATCAAGTCCGGCCACCGGAAGTGCCAAGCGAGCAACCCCAAAGCCCCCGTTGAGGTCTCAGAATTCATTGAATATGAACCAATCCATGCCGTTTAAGGCCATGGAATTAACCCCGGCTGCTAGGCAAAAGAAGCAAACACCAGAAAAGGTGGCCGCACTTTTGCCTGAGTCTGCTCTTTATAATCAATTGCTTGATTTTGAGGCTCAGGTGGATGCTGCTTTGGCTAGGAGAAAAATTGATATACAGGAGGCTAGGCTCCCTCCCCATGTTCAGAAAACTCTTCGTGTTTATGTGTTTAATACCTTCTCAAATAATGCAAAAATGGATGCTGAGAATAGAAAGGCTGATGAATCTTGGTGGTCTCTCAAGATAACTGGAAGGGTATTGGAAGATGGTATGGATTCCGTGTCTGAAATTTCGCTGAGATCGAGTCCTTCATACCCGAAGTTCTCTGCATTTTTCAAGAAAATTACCATACACTTGGATCAAAGCCTTTATCCAGATAATCATGTCATTGTATGGGATAGTGCTTGTTCCCCTACCCAACAGGATGGTTTTGAGGTGAAGAGGAAAGGAGACAAAGAATTTACTGCAGTGATTGTAATAGAAATGAATTATACACCTGACAAGTTTATGGTTTCATCACCACTGTCTAAACTTTTAGGGATTGAGGTAGGGACTCGCCCAAGAATAATAGCTTCTCTTTTTAACTACGTGGAGTCCAGGAAGCTACAGAGCCCAAATGACCCTTCATTCTTCATATGTGATCCTTCTCTACAAATGGTGTTTGGGGAAGAGAAGATGGATTTCACCATGGTTTCTCAGAAGTTATCACAGCATTTGTCGCAACCACAACCTACACATATGGAGCATATCATCAAGCTTTCTGGATATTCTCCAGCTGTATCTGCATGTTACGATATACAGGTTGATGTGCCTTTTCCACTGGAAAAGGATAAGTCTACATTCTTGGCAGGCCTTGAGAGTCAGAAAGAGATTGAAGCTTATGATGAGGCGATTTGCGCTTCCTTAAAGAAGATCCAGGAGCATCGCAGAAGACGAGCTTTCTTTCTTAGCTTTAGTCAGTCTCCAGCAGAGTTTATTGATACTTTGATTGCTTCTCAGAGCAAGGATTTAAAACTTGTTGCTGGAGATGCCAGCCATAATGTTGAAAAGCAACTTAGTTCTGAATTCTTCAATCAACCATGGGTTGACGATGCTGTCATTCGTTACTTGAACCGCAAAACTGCAGGAAGTGATGCTCATGGACGCAACTAA 2376 0.439 MAVTFYDLSSASGLKKLDEYLLPRSYITGYQASKDDLTVYAALPTAPSDECVNVSRWYKHIDALLRVSGVSGEGSGVTVEGSLVAEPVATPPAADTKAAAADDDDDDDVDLFGEETEEEKKAAEERAAAVKASAKKKESGKSSVLLDVKPWDDETDMKKLEESVRSVQMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLTVEPINEYVQSCDIVAFNKIYEKRERKLSMESSSDSFVRSISKTPKPTPSILEAAIRMNDQSKNVAASSLFGHSAPQPHHPNPIQQWNHPNPLLSQPQSHPQTQFPGLFQFSEPQNQVFAQAQFAQAQLQSRAHPQPQTQPLAHLHNVNTNAANGVSSPATGSAKRATPKPPLRSQNSLNMNQSMPFKAMELTPAARQKKQTPEKVAALLPESALYNQLLDFEAQVDAALARRKIDIQEARLPPHVQKTLRVYVFNTFSNNAKMDAENRKADESWWSLKITGRVLEDGMDSVSEISLRSSPSYPKFSAFFKKITIHLDQSLYPDNHVIVWDSACSPTQQDGFEVKRKGDKEFTAVIVIEMNYTPDKFMVSSPLSKLLGIEVGTRPRIIASLFNYVESRKLQSPNDPSFFICDPSLQMVFGEEKMDFTMVSQKLSQHLSQPQPTHMEHIIKLSGYSPAVSACYDIQVDVPFPLEKDKSTFLAGLESQKEIEAYDEAICASLKKIQEHRRRRAFFLSFSQSPAEFIDTLIASQSKDLKLVAGDASHNVEKQLSSEFFNQPWVDDAVIRYLNRKTAGSDAHGRN 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01890 791 Coils Coil 113 133 - -
Pumo10g01890 791 Gene3D - 134 230 IPR014717 -
Pumo10g01890 791 ProSiteProfiles SWIB/MDM2 domain profile. 572 649 IPR003121 -
Pumo10g01890 791 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 8 230 - -
Pumo10g01890 791 FunFam Elongation factor 1-beta 1 like 135 230 - -
Pumo10g01890 791 Gene3D SWIB/MDM2 domain 569 656 IPR036885 -
Pumo10g01890 791 SMART EF1_GNE_2 141 230 IPR014038 GO:0003746|GO:0006414
Pumo10g01890 791 Gene3D - 4 77 - -
Pumo10g01890 791 MobiDBLite consensus disorder prediction 361 390 - -
Pumo10g01890 791 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 105 113 IPR001326 GO:0003746|GO:0005853|GO:0006414
Pumo10g01890 791 MobiDBLite consensus disorder prediction 289 318 - -
Pumo10g01890 791 Pfam EF-1 guanine nucleotide exchange domain 143 230 IPR014038 GO:0003746|GO:0006414
Pumo10g01890 791 SUPERFAMILY GST C-terminal domain-like 11 68 IPR036282 -
Pumo10g01890 791 MobiDBLite consensus disorder prediction 85 110 - -
Pumo10g01890 791 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 219 230 IPR001326 GO:0003746|GO:0005853|GO:0006414
Pumo10g01890 791 SUPERFAMILY SWIB/MDM2 domain 567 657 IPR036885 -
Pumo10g01890 791 FunFam Elongation factor 1-delta 1 3 78 - -
Pumo10g01890 791 CDD SWIB_like 579 647 - -
Pumo10g01890 791 MobiDBLite consensus disorder prediction 281 318 - -
Pumo10g01890 791 CDD EF1B 139 230 IPR014038 GO:0003746|GO:0006414
Pumo10g01890 791 Coils Coil 789 791 - -
Pumo10g01890 791 SUPERFAMILY eEF-1beta-like 138 230 IPR036219 -
Pumo10g01890 791 SMART swib_2 573 652 IPR019835 -
Pumo10g01890 791 Pfam SWIB/MDM2 domain 576 647 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01890 Pumo-Chr10 24929122 24935673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01890 5 230 Eukaryotic Initiation Factors Gene Family AT2G18110 80.702 8.97e-108 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Pumo10g01890 EF1_GNE 4.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01890 K11650 - gmx:100784907 922.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01890 10 24929122 24935673 Pumo10g01890 10 24929122 24935673 ECH