Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01872 ATGGAGAACAACCAGCAAGGCGCTCAGGCCCAATCGGGCCCGTACCCCGGCGGCGGCGCGGCAGCCGGAAGTGCAGGTGCAGGTGCAGGTGCAGGTGCAGGCGCGCCCCCGTTTCAGCACCTGCTCCACCAGCAGCAGCAGCAGCTGCAGATGTTCTGGTCGTACCAGCGGCAAGAGATCGAGCACGTGAACGACTTCAAGAACCACCAGCTCCCCCTGGCCCGCATCAAGAAGATCATGAAGGCCGACGAGGACGTCCGCATGATCTCCGCCGAGGCCCCCATCCTCTTCGCCAAGGCCTGCGAGCTCTTCATCCTCGAGCTCACCATCCGCTCCTGGCTCCACGCCGAGGAGAACAAGCGCCGCACCCTCCAGAAGAACGACATCGCCGCCGCCATCACCCGCACCGACATTTTCGACTTCCTCGTTGATATCGTCCCCCGCGACGAGATCAAGGACGATGCTGCCCTTGTCGGGGCCACCGCTAGCGGTGTTCCCTACTACTACCCGCCCATTGGCCAGCCTGCCGGGATGATGATTGGCCGTCCCGCCGTTGATCCCGCCACCGGAGTTTATGTCCAGCCGCCCTCCCAGGCCTGGCAGTCCGTCTGGCAGTCCGCCGCCGAGGACGCGTCCTACGGCACCGGCCCCGCCGGTGCCCAGGGGAACCTTGATGGCCAGAGTTGA 687 0.655 MENNQQGAQAQSGPYPGGGAAAGSAGAGAGAGAGAPPFQHLLHQQQQQLQMFWSYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDDAALVGATASGVPYYYPPIGQPAGMMIGRPAVDPATGVYVQPPSQAWQSVWQSAAEDASYGTGPAGAQGNLDGQS 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01872 228 MobiDBLite consensus disorder prediction 1 31 - -
Pumo10g01872 228 FunFam Nuclear transcription factor Y subunit gamma 39 148 - -
Pumo10g01872 228 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 70 133 IPR003958 -
Pumo10g01872 228 Gene3D Histone, subunit A 37 148 IPR009072 GO:0046982
Pumo10g01872 228 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 44 166 - -
Pumo10g01872 228 SUPERFAMILY Histone-fold 45 142 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01872 Pumo-Chr10 24739481 24744247 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01872 31 227 CCAAT-HAP5 Transcription Factor Family AT3G48590 80.383 2.14e-104 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Pumo10g01872 CBFD_NFYB_HMF 2.3e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01872 - - gmx:100818447 375.941