Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01864 ATGGAATCCATGTCAGGCAACGAGTGGTCGGTGAAGGAAGAAGTGAGCATCATACTGCTGCTATTGTCTGCAAGTGCAAAAGGTAACCAAACAAAGGGGGACTTTGAAGAAGTAGAAGGGGGGAGGGGGAAGTTGAATTTTTGTTTTTCTTTATTTTTTGTTATTATGGACTGGAATTTGAGAGCACCTTCTTGGGATTTGGTGGATGTGGATAAGGCAACCTTACAAAACATAGGAACAATGGAGGAGCAAAACAGATTTGGAGTTTATAGAATGAAAGGGGAGTTTTCTGTTGACTTGAAGCTTGGTCATGTGGGGAATTCTGGCACTGAAGCCAAGTCCAAAGATGCTGCTGCTGCTGCTACTGGTGCTGGAGTGTCCAAAGTGGCATCCTCACCTTCAGGGTCTTCTAAGAGAGCTAGAGCCATTAACAGCACATCCCTCACAGTGTCATGCCTTGTGGATGGGTGCAATTCAGATCTTAGCAATTGTAGAGATTATCATAGGCGGCATAAGGTGTGCGAACTCCATTCCAAGACCCCAGAGGTCACAATTAGTGGCCTCAAGCAAAGGTTCTGCCAACAATGTAGCAGGTTCCATTCGCTGGAGCAATTTGATGAAAGAAAAAGAAGCTGCAGAAAACGTTTAGATGGACACAACAGAAGGAGAAGAAAGCCCCAGCCAGAACCTCTCTCGCGACCTGGTAGTTTTTTGTCGAATTACCAAGGCACCCAGTTGCTACCCTTCTCAAGTCCACACGTATATCCTTCCACTGCCATGGTGAGCCCAGCTTGGAGTGGTGGACTTGTCACTTCCTCTGCAGATGCTAGGCTTCACAACCACCACCAACAAATGCATTTGGTTGACAAACAAGACCTTTTTCTCGGATCTTCTCACAAAGAAGGGAAGCAACAAGTAGCATTCTTACACGGCAACAACCACCATCCCTCCACAGCTGCACTCAGCAACCACCAAAACCCACCACCTTTCCCATCCTCCTCTTCTGTGTGCCACACGCTTCTCAGGACCAGCCCTCTATCAGAAACCTGCGGAGGAGTGAGAAGCAAATTAATGTTCTGTGAAAGCCTAACAACAACAACAACTAATAACAACTCGGTGCACGACACTACTCCTTGTGCTCTCTCTCTTCTGTCATCATCACAGACGCACACACCAGCTGGGAATAATGGCTTGAACCAAATGGTGCACCACCAGCCTCCTCCCTCAATGTCCCTCATGCAGCCCTTAGGCCTGAGCCTGCAGGATAACAACAACAGCTTAGAGTCTGTGGAGCGAGTCTTGGTCCCCAATGGGAGTGACCATTGTTCCTCCATGTATAGCTTGGGTTCTGATCATGGATCCCAGTGCAATGAGGCCCCTCAACTCTTTCCCTTTCAATGGGAATAG 1407 0.4769 MESMSGNEWSVKEEVSIILLLLSASAKGNQTKGDFEEVEGGRGKLNFCFSLFFVIMDWNLRAPSWDLVDVDKATLQNIGTMEEQNRFGVYRMKGEFSVDLKLGHVGNSGTEAKSKDAAAAATGAGVSKVASSPSGSSKRARAINSTSLTVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPEVTISGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQPEPLSRPGSFLSNYQGTQLLPFSSPHVYPSTAMVSPAWSGGLVTSSADARLHNHHQQMHLVDKQDLFLGSSHKEGKQQVAFLHGNNHHPSTAALSNHQNPPPFPSSSSVCHTLLRTSPLSETCGGVRSKLMFCESLTTTTTNNNSVHDTTPCALSLLSSSQTHTPAGNNGLNQMVHHQPPPSMSLMQPLGLSLQDNNNSLESVERVLVPNGSDHCSSMYSLGSDHGSQCNEAPQLFPFQWE 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01864 468 ProSiteProfiles Zinc finger SBP-type profile. 149 226 IPR004333 GO:0003677
Pumo10g01864 468 MobiDBLite consensus disorder prediction 213 237 - -
Pumo10g01864 468 FunFam Squamosa promoter-binding-like protein 14 143 213 - -
Pumo10g01864 468 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 106 457 IPR044817 GO:0003677
Pumo10g01864 468 SUPERFAMILY SBT domain 150 231 IPR036893 GO:0003677|GO:0005634
Pumo10g01864 468 Pfam SBP domain 152 225 IPR004333 GO:0003677
Pumo10g01864 468 Gene3D - 143 213 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01864 Pumo-Chr10 24654806 24659385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01864 56 468 SBP-box Gene Family AT5G50670 37.705 1.47e-67 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pumo10g01864 SBP 6.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01864 - - gmx:100787407 657.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01864 10 24654806 24659385 Pumo10g01864 10 24654806 24659385 ECH
Pumo6g00534 6 6667808 6671561 Pumo10g01864 10 24654806 24659385 PCT