Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01847 ATGGAAAGGCTAAATTTTATTAAAAATGGAGTGAGTAGATTGCCTCCAGGTTTTCGTTTCCAGCCAACAGATGAAGAGCTTGTGTTTCAGTACTTGAAATGTAAGATCTTTTCATGCCAGTTGCCTGCTTCAATCATTCCTGAGATTAATGTCAGCAAAAATGATCCTTGGGATTTGCCAGGAAATTGTGATGAGCAAGAGAGGTACTTTTTCAGCTCCAAGGAAGCCAAGTATCGAAACGGCAATCGCATGAACCGAACAACTAACTCTGGCTACTGGAAGGCAACAGGATCAGACAAAAAAATTTCATCATCAATAAGTAATATTGGTTTTGCGGGGCTAAGAAAGACTCTAGTATTTTATGAAGGAAAATCTCCAAATGGGTCTCGAACTGATTGGGTCATGCATGAATATCGACTCCTCAGCTTAGAAACTATTGCTTCCAATTCATCCCAGAACTATGCAAACGAGATAGGGGATTGGGTTCTGTGTCGCATATTCATGAAGAAAAGAAGTATAGAAAGTGATAACAATAACAACACTACTACTGCTCCCAGAAAGAACAATGTAGTGACGAATTATGCTCAGGTGGCTCAGCCAAGATTCTTTGATTTTTTGAGTGTTCACAATTCAGCTCCGGCTCCTGTACAATATTCTTCTACATCCTCATCTTGTTCAAGTTCCAATAACGTTGTAGAGGTCTCTTCACCTAACCACGAAGAAACAAGCGGCTATGCTCATTTTTAA 747 0.3976 MERLNFIKNGVSRLPPGFRFQPTDEELVFQYLKCKIFSCQLPASIIPEINVSKNDPWDLPGNCDEQERYFFSSKEAKYRNGNRMNRTTNSGYWKATGSDKKISSSISNIGFAGLRKTLVFYEGKSPNGSRTDWVMHEYRLLSLETIASNSSQNYANEIGDWVLCRIFMKKRSIESDNNNNTTTAPRKNNVVTNYAQVAQPRFFDFLSVHNSAPAPVQYSSTSSSCSSSNNVVEVSSPNHEETSGYAHF 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01847 248 ProSiteProfiles NAC domain profile. 14 169 IPR003441 GO:0003677|GO:0006355
Pumo10g01847 248 MobiDBLite consensus disorder prediction 218 248 - -
Pumo10g01847 248 SUPERFAMILY NAC domain 11 169 IPR036093 GO:0003677|GO:0006355
Pumo10g01847 248 Gene3D NAC domain 23 174 IPR036093 GO:0003677|GO:0006355
Pumo10g01847 248 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 220 - -
Pumo10g01847 248 Pfam No apical meristem (NAM) protein 15 140 IPR003441 GO:0003677|GO:0006355
Pumo10g01847 248 MobiDBLite consensus disorder prediction 218 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01847 Pumo-Chr10 24321328 24323080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01847 1 248 NAC Transcription Factor Family AT5G13180 49.810 5.55e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo10g01847 NAM 4.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01847 - - gmx:100527806 448.743