Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01844 ATGGGTTGCGTGCTCGGGACGCCGGCCGGTGCCGGAGACCAGAGCCGTCGCCGGAGCGAGAAGCGCGACGGTGCCGCCGACCAAGGTAATAATGCCGTTAGGGTTCGAGATAGGGAGAGGAACCGGCACACAGGCGATTTTCCGGGGACTCTTCCGGCGCCGGAGCGCCGGAAACCTAGACTCGATCCGTGCGCCGTCACGCAGCAGGGATGGCCGTCGTGGTTGATGGCCGTCGCCGGCGAAGCCATCGGCGACTGGACTCCTCGTCGCGCCAACACCTTCGAGAAGCTCGCAAAGATTGGGCAAGGAACCTATAGTAATGTGTATAAGGCTAGGGACCTTGTGACAGGGAAGATTGTGGCATTGAAGAAAGTGAGATTTGATAATTTGGAGCCAGAGAGTGTGAAGTTCATGGCAAGAGAGATACTTGTTTTGAGGAGGCTTGATCACCCCAATGTTGTGAAGCTTGAGGGTTTGGTTACTTCTAGAATGTCGTGTAGTCTTTATTTGGTGTTTGAGTATATGGAGCATGATCTTGCAGGGCTTGCAGCTGGCCAGGGTGTCAAGTTCACTGAACCTCAGGTTAAATGCTTTATGAAGCAATTACTCTCTGGTCTTGAGCATTGCCACAGTCGAGGCGTGTTGCACCGTGATATCAAGGGTTCCAATCTGCTTATTGACAATGAAGGGATCCTTAAAATTGCAGATTTTGGACTGGCAACTTTTTATGATCCTAAGATAAAACAGGCAATGACAAGCAGAGTTGTAACCCTTTGGTATCGTCCCCCTGAGCTGCTTCTTGGGGCTACAGTTTATGGTGTTGGTATTGACCTTTGGAGTGCTGGTTGCATCTTGGCAGAGCTGCTTGCTGGAAAGCCAATAATGCCTGGCCGAACAGAGGTTGAACAACTGCACAAAATATTTAAGTTGTGCGGCTCTCCATCTGAGGAATACTGGAGGAAGTATAGATTGCCAAATGCTACAATCTTTAAGCCCCAGCAGCCATATAAATGTTGCATCTCAGAAACATACAAGGACTTTCCTCCATCTTCACTACCTCTAATTGAAACTCTTCTTGCAATAGATCCTGATGATCGTGGCACTGCCTCAGCAGCACTAAATAGTGAATTCTTCACCACAGAGCCCTATGCTTGTGAACCATCTAGTTTGCCAAAGTATCCTCCCAGCAAAGAATTGGATGTAAAACTGAGAGATGAAGAAGCAAGAAGGCAAAAGGCTCTAAATGGGAAAGCTAGTGCAGTTGATGGTGCCAAAAAAGTCAGAGTACGTGAGCGTGAGCGTGGCCGGGCTGTTCCGGCCCCTGAAGCCAATGCAGAGATCCAAACAAACTTAGATAGGTGGAGAGTTGTGACCCATGCAAATGCAAAAAGCAAGAGTGAGAAATTTCCACCTCCTCATCAAGATGGAGCTGTTGGATATCCACAGGATGCATCAAACAAAGGACCTGTTTCATTTGGCGCCCCCGACACTTCCTTTTCTTCAGGGATATTTAATTCAAAACCTTCTGGACCTGTTAGAAACCATGCTGCTGCAGCACTTTACAGAGGGAGGAAAACTAAAAAAGAAGAGTCCCAGATGGCGTCATCATGGAAATTCATGCGTCCATTCAAGCCATCAACAGTTGGACTTTCTATGGATTTATTATTTAGGAGCAAATAA 1680 0.4804 MGCVLGTPAGAGDQSRRRSEKRDGAADQGNNAVRVRDRERNRHTGDFPGTLPAPERRKPRLDPCAVTQQGWPSWLMAVAGEAIGDWTPRRANTFEKLAKIGQGTYSNVYKARDLVTGKIVALKKVRFDNLEPESVKFMAREILVLRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAGQGVKFTEPQVKCFMKQLLSGLEHCHSRGVLHRDIKGSNLLIDNEGILKIADFGLATFYDPKIKQAMTSRVVTLWYRPPELLLGATVYGVGIDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWRKYRLPNATIFKPQQPYKCCISETYKDFPPSSLPLIETLLAIDPDDRGTASAALNSEFFTTEPYACEPSSLPKYPPSKELDVKLRDEEARRQKALNGKASAVDGAKKVRVRERERGRAVPAPEANAEIQTNLDRWRVVTHANAKSKSEKFPPPHQDGAVGYPQDASNKGPVSFGAPDTSFSSGIFNSKPSGPVRNHAAAALYRGRKTKKEESQMASSWKFMRPFKPSTVGLSMDLLFRSK 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01844 559 ProSiteProfiles Protein kinase domain profile. 94 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g01844 559 MobiDBLite consensus disorder prediction 462 494 - -
Pumo10g01844 559 Gene3D Transferase(Phosphotransferase) domain 1 177 418 - -
Pumo10g01844 559 FunFam probable serine/threonine-protein kinase At1g54610 177 418 - -
Pumo10g01844 559 SMART serkin_6 94 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g01844 559 FunFam probable serine/threonine-protein kinase At1g54610 81 176 - -
Pumo10g01844 559 MobiDBLite consensus disorder prediction 1 59 - -
Pumo10g01844 559 ProSitePatterns Protein kinases ATP-binding region signature. 100 123 IPR017441 GO:0005524
Pumo10g01844 559 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Pumo10g01844 559 CDD STKc_CDK9_like 94 378 - -
Pumo10g01844 559 Gene3D Phosphorylase Kinase; domain 1 81 176 - -
Pumo10g01844 559 Pfam Protein kinase domain 94 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g01844 559 MobiDBLite consensus disorder prediction 14 45 - -
Pumo10g01844 559 SUPERFAMILY Protein kinase-like (PK-like) 88 383 IPR011009 -
Pumo10g01844 559 PANTHER CELL DIVISION PROTEIN KINASE 92 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01844 Pumo-Chr10 24294224 24298970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01844 86 412 Core Cell Cycle Gene Families AT5G10270 51.020 1.57e-114 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Pumo10g01844 Pkinase 9.9e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01844 K08819 - gmx:100793033 1085.09