Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01839 ATGGCAGCTTTTTCATCATACCAATACCATCCTTTTCTTGTTGACCCAGCATTCTTCCCCAACAACATTAACACTCCTTCTCCTCCTCCTCCTCCACCTCAGTTTCAACTCCCTCAGGAATCATCTTTTAATGTCACAAACCAGGAGACTAGCTGTGTTTACCAGAGCTCCAAGATCACCATCAGTGACAATGAGCCTTCCGTAACTAAAAACCTTAGTCCTCAGTCCTCCATGGTAGTGGACAAGCTTGATACTGGGGAGCAGGTCACTCAGAAGGTCAATACTCCTGTGGAGAAGAAAAGGAGAACCAGAAATGGATCTTCCTTGACCAGTAACCCCCAATCCAAGGATACTGCAACAGAAGGGAAGAACAAGAAACAAAGGAAGAGCAATGGTGGGGTGAAAGAAGAGGACAAGGCAAAAGTAGAGAAGAAAGATCAGAGAAAATGTCCTGAAGAGCCCCCAACAGGCTATATCCACGTCCGAGCAAGAAGGGGTCAGGCAACGGATAGCCACAGCCTTGCTGAAAGGGTGAGAAGAGAGAAGATAAGTGAAAGGATGAAGGTCTTGCAACGGCTTGTGCCAGGCTGTGATAAGGTGACTGGAAAGGCCCTTATGTTGGATGAAATAATCAATTATGTTCAGTCTTTACAGAATCAAGTTGAGTTCTTGTCAATGAAGCTTGCTTCCGTGAATCCCGTGTTTTATGACTTGGCAACAGACCTAGACACCCTCTTGGTTAGACCAGAGAAACTAAATAGCATGGCAAGTCCATCACCACTACCATCTGTGTCACATTGCAACAGCCCCAACCAAGCCACAACAACTTTTGCTGATACAACCACCATGACCCCCACCAACAACATCTTCCACACTGCTAGTGACTATCTTTTGGATAATTCAGTCTCATTTTTTCTTCAAGGGCAGAGGCCAAATGTGTTCTCTGAGGAGGATACCGGTAGTCATTTCTGGGACGCAGAGGACCAGCGACAAAAGTTTCTTCATCCATATGGATTCAGCAACAACTTATGTTCCTTTCATTAA 1044 0.4531 MAAFSSYQYHPFLVDPAFFPNNINTPSPPPPPPQFQLPQESSFNVTNQETSCVYQSSKITISDNEPSVTKNLSPQSSMVVDKLDTGEQVTQKVNTPVEKKRRTRNGSSLTSNPQSKDTATEGKNKKQRKSNGGVKEEDKAKVEKKDQRKCPEEPPTGYIHVRARRGQATDSHSLAERVRREKISERMKVLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASVNPVFYDLATDLDTLLVRPEKLNSMASPSPLPSVSHCNSPNQATTTFADTTTMTPTNNIFHTASDYLLDNSVSFFLQGQRPNVFSEEDTGSHFWDAEDQRQKFLHPYGFSNNLCSFH 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01839 347 Gene3D - 164 233 IPR036638 GO:0046983
Pumo10g01839 347 MobiDBLite consensus disorder prediction 19 49 - -
Pumo10g01839 347 Pfam Helix-loop-helix DNA-binding domain 171 218 IPR011598 GO:0046983
Pumo10g01839 347 MobiDBLite consensus disorder prediction 62 157 - -
Pumo10g01839 347 MobiDBLite consensus disorder prediction 62 93 - -
Pumo10g01839 347 CDD bHLH_AtBPE_like 157 242 - -
Pumo10g01839 347 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 167 217 IPR011598 GO:0046983
Pumo10g01839 347 MobiDBLite consensus disorder prediction 119 157 - -
Pumo10g01839 347 MobiDBLite consensus disorder prediction 257 281 - -
Pumo10g01839 347 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 165 233 IPR036638 GO:0046983
Pumo10g01839 347 SMART finulus 173 223 IPR011598 GO:0046983
Pumo10g01839 347 MobiDBLite consensus disorder prediction 22 37 - -
Pumo10g01839 347 FunFam Basic helix-loop-helix transcription factor 164 236 - -
Pumo10g01839 347 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 64 274 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01839 Pumo-Chr10 24209222 24212108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01839 1 302 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 43.421 1.74e-60 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo10g01839 HLH 2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01839 - - gmx:100806696 583.948