Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01831 ATGATGTCGAGAATAAACAGCAGCGTTGGCTGGATGGAAGAACGAGAAGACGAAAACTCCGCCTCAGCTTCCTGGGCCAGAACCTCCAACAACATCATAACCACCACCGACACAGCTTTTGTCGAAAACACAAACCACGACGACGACGACTTAGGTTCTCTCTGCGCCTTCAAGCCCATGCTCGACGACGAATGGTACATCACCAACCACCACCAATTGCAAGAGATGTCCTTCGACCCCGACAACCTCTTACTCCACGCCGCCGTCGACTCTTCCTCCTCCTGCTCTCCCTCCCACCTCCAGTACTTCCTCCCTCCCAACCCCAAACCCCCCACTCTTCTCAACCCCTTCGACATGCCCTTTCTTGACCCTCAAGCTTCTTCTTCCTCCTCCTTACCCCTTCTCGCTCTCCCCAACCTCGCCTCTGAAACACACTTCACACTCACACCCCCTCACACCAACACCGCCTTCACCGGGTTTCAGAGCCTCCAGGACGGTTCCTCCAACCCTCTGTTTCTCAACCGGTCCAAGATTCTGAGGCCGCTCGAGTCGCTGCCACCCTCCGGGGCGCAGCCCACGCTGTTTCAGAAGAGAGCCGCGCTGAGGAAGAACGCTAACTCTGTTGGGGAAGGGACTGATAAGAAGAGGAAGGAGAAGGAGGAGTTCATGGAGGACGCCAGTTTCGACGGGTCCGGGTCCGGCTTGAACTATGATTCTGATGACTTAACCGACAGCAACGTTAAGGTGGATGAGGCTAGTGCTAAGAATGGTGGGATTAGCTCCAATGCCAACAGCACCGTCACCGGTTTCGATCAGAAAGGGAAGAAGAAGGGAATGCCTGCTAAGAATTTGATGGCCGAACGACGCCGTAGGAAGAAGCTCAATGATAGACTCTACATGCTGAGGTCCGTTGTTCCCAAAATTAGCAAAATGGACAGGGCTTCAATTCTAGGGGATGCAATTGAGTATCTTAAGGAGCTTCTGCAAAGGATCAATGATCTTAATAACGAGTTGGAATCCACGCCTGCTGGTTCTTCACTCACTCCTGCTTCAAGTTTCCATCCTTTGACGCCTACTCCTCCTACACTGCCAAGCCGAATCAAAGAAGAACTGTGCCCCAGCTCATTGCCAAGCCCCAATGGCCAACCTGCCAGGGTTGAGGTTCGGCTGCGCGAAGGAAGGGCTGTTAACATCCACATGTTTTGTGCCCGCAAACCTGGTCTGTTGCTCTCAACCATGAGGGCTTTGGATAACCTTGGATTAGACATTCAGCAAGCTGTTATTAGCTGCTTCAATGGATTTGCTATGGATATTTTTCGAGCCGAGCAATGCAAAGAAGGTCAGGATGTCCATCCGGAGCAAATCAAAGCAGTTCTCTTGGATTCAGCTGGCTACAATGGCATGATGTAA 1410 0.5213 MMSRINSSVGWMEEREDENSASASWARTSNNIITTTDTAFVENTNHDDDDLGSLCAFKPMLDDEWYITNHHQLQEMSFDPDNLLLHAAVDSSSSCSPSHLQYFLPPNPKPPTLLNPFDMPFLDPQASSSSSLPLLALPNLASETHFTLTPPHTNTAFTGFQSLQDGSSNPLFLNRSKILRPLESLPPSGAQPTLFQKRAALRKNANSVGEGTDKKRKEKEEFMEDASFDGSGSGLNYDSDDLTDSNVKVDEASAKNGGISSNANSTVTGFDQKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLNNELESTPAGSSLTPASSFHPLTPTPPTLPSRIKEELCPSSLPSPNGQPARVEVRLREGRAVNIHMFCARKPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDIFRAEQCKEGQDVHPEQIKAVLLDSAGYNGMM 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01831 469 MobiDBLite consensus disorder prediction 339 353 - -
Pumo10g01831 469 Pfam Helix-loop-helix DNA-binding domain 285 327 IPR011598 GO:0046983
Pumo10g01831 469 Gene3D - 272 342 IPR036638 GO:0046983
Pumo10g01831 469 MobiDBLite consensus disorder prediction 202 278 - -
Pumo10g01831 469 MobiDBLite consensus disorder prediction 208 226 - -
Pumo10g01831 469 SMART finulus 284 333 IPR011598 GO:0046983
Pumo10g01831 469 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 281 345 IPR036638 GO:0046983
Pumo10g01831 469 Coils Coil 317 341 - -
Pumo10g01831 469 CDD ACT_UUR-ACR-like 398 458 - -
Pumo10g01831 469 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 161 466 - -
Pumo10g01831 469 MobiDBLite consensus disorder prediction 255 271 - -
Pumo10g01831 469 CDD bHLH_AtAMS_like 281 346 - -
Pumo10g01831 469 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 278 327 IPR011598 GO:0046983
Pumo10g01831 469 MobiDBLite consensus disorder prediction 339 383 - -
Pumo10g01831 469 MobiDBLite consensus disorder prediction 1 23 - -
Pumo10g01831 469 FunFam BHLH transcription factor 274 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01831 Pumo-Chr10 24102407 24106392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01831 57 442 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 51.562 1.02e-119 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo10g01831 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01831 - - gmx:100217332 690.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01667 4 21143814 21145774 Pumo10g01831 10 24102407 24106392 ECH
Pumo10g01831 10 24102407 24106392 Pumo10g01831 10 24102407 24106392 ECH
Pumo6g00568 6 7161999 7166061 Pumo10g01831 10 24102407 24106392 PCT