Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01830 ATGGCATCATCGGAGGTCACGATGAAGGGAAATTGCTTGAACCATAACGACAGCGGAGCTGCGGAGGCTCATTCGCCCAAAGACGCAGAAGCTGCACTTTTCAGGGAACTGTGGCACGCTTGCGCCGGTCCTCTAGTCACGGTACCGCGCGAGAGAGAGCGCGTGTTTTATTTCCCTCAGGGACATATTGAGCAGGTGGAGGCGTCCACGAATCAGGTGGCGGACCAGCACATGCCGGTTTACGATCTCCCTCCCAAGATCCTTTGTCGGGTCATCAACGTGCAGCTGAAGGCCGAGCCCGACACGGATGAGGTGTTTGCTCAGGTGACTTTGCTTCCGGAGCCAAATCAAGGTGAGAATGCGGTGGAGAAAGAGCCACCACCGCCTCCGCCGCCGCGGTTTCATGTTGATTCTTTCTGTAAGACTCTGACGGCGTCCGATACCAGTACACATGGTGGGTTTTCCGTGCTGAGACGGCACGCTGATGAATGTCTTCCTCCTCTGGATATGTCGAAGCAGCCACCCACCCAGGAATTGGTGGCTAAGGATCTTCATGGGAATGAATGGCGATTTAAACATATCTTTCGGGGTCAACCCCGTAGACACTTGCTTCAGAGTGGTTGGAGTGTTTTTGTCAGCTCCAAAAGGCTTGTCGCTGGGGATGCATTTATTTTTCTTAGAGGTGAGAATGGGGAACTTCGTGTTGGTGTCCGACGAGCAATGAGACAGCAGGGTAATGTTCCATCCTCAGTTATCTCCAGCCACAGCATGCATCTCGGGGTCCTTGCAACTGCTTGGCATGCCATCTTGACGGGGACCATCTTCACTGTTTATTACAAGCCCAGGACCAGTCCCTCTGAATTTATTGTTCCATATGATCAATATATGGAGTCTCTAAAAAATAATTATAGCATCGGGATGCGGTTCAAAATGAGGTTTGAAGGTGAAGAGGCTCCAGAGCAGAGGTTTACTGGTACCATTGTTGGAATAGAAGATTCTGATCCCAAAAGGTGGAGAGATTCCAAATGGAGATGCCTCAAGGTGAGATGGGATGAAACATCCAACACGCCTCGTCCTGAGAGAGTTTCCCCTTGGAAAATAGAGCCTGCTCTTGCTCCTCCAGCTCTAAATCCTCTTTCAATGCCCAGGCCTAAAAGGCCTCGGTCTAATGCAGTTCCTTCATCCCCAGATTCTTCTGTTCTTACTCGAGAAGTGTCATCTAAAGTAAGCATAGACCCTTCACCAGCAAATGGGTTTCCAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCAATTTTGCAGAAAGCAATGAGTCTGATACTGCTGAGAAGTCTGTTGTTTGGCCCCCTGCTGCAGTAGATGATGAAAAGATTGATGTTTCTACTTCAAGGAGGTATGGTTCAGAGAGCTGGATGTCAATGGGGAGGAATGAACCTACATATTCGGATCTTCTTTCTGGCTTTGGGGCCAGTGGGGATCCTTCTCAATCATCCGTGATGGATCAAAGGAGTCCTGTAGCTTATCCTGCTAGAAAGCAATCATTGGATCATGAAGGGAAACTTCACATGCCTCATCCATGGCCTGTAATGCCCTCTAGTCTGTCGCTGCACATCTTGGACTCTAATTCAAAAGGTCCTGCACATGGTGGTGATACAACTTACCAAGCTCGAGGGAATTTGAGGTACAGTGCATTTGGTGAATACCCTGCACTGCATGGTCATAAAGTTGAGCATTCACATGGAAACTTGATGCCACCCCCACCTGCACCCCTAACTCAATATCATAGTCCTTGTTCAAGAGAGCCTATGTCACAACCAGTGTCAGCAAAAACTTGTGAGGCTGTGAAACCAAAAGATGGTGACTGTAAGCTATTTGGCTTCTCACTTATCAGTGGCCCCATTGTACCAGAGCCGTCTTTATCACAAAGAAATGTGAGTGAGCCTGCTGGTCAGATGCATCTTACACCACACCAACAAAGAACATCTGAAAATGATGAGAAGTCGGACCACTCAAAGGGCTCAAGACCTGCAGATGATCCAGTTGATGACCATGACAAACCATTACAGACTTCTCAGATGCATACAAAAGATGTTCAATCTAAACCTCTCGGTGGTTCTGCTAGGAGTTGCACTAAAGTTCACAAGAAGGGCATTGCACTTGGTAGGTCAGTGGACCTTACAAAGTACAGTGGCTATGATGAATTAGTTACTGAATTGGATCAGCTGTTTGAATTTGGGGGTGAATTATTGTCAACTAAAAAAGATTGGCTTATTGTCTATACTGATAATGAGGGTGATATGATGCTTGTAGGCGATGATCCATGGCAGGAATTCTGTGCCATGGTTCGCAAAATTTATATCTACCCTAAGGAGGAGATCCAGAAAATGAGCCCGGGTACCTTAAGTTCAAAAAATGAAGAGAACCAGCCGGTTACGGCTAGTGAAGGTGCAGATGCAAAAGACGTTAAATGTCAGCCGCATCAAAAGTTCAACTCAGAAAATGGCCTAGATGCCTGA 2523 0.4748 MASSEVTMKGNCLNHNDSGAAEAHSPKDAEAALFRELWHACAGPLVTVPRERERVFYFPQGHIEQVEASTNQVADQHMPVYDLPPKILCRVINVQLKAEPDTDEVFAQVTLLPEPNQGENAVEKEPPPPPPPRFHVDSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFKHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTGTIFTVYYKPRTSPSEFIVPYDQYMESLKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDSDPKRWRDSKWRCLKVRWDETSNTPRPERVSPWKIEPALAPPALNPLSMPRPKRPRSNAVPSSPDSSVLTREVSSKVSIDPSPANGFPRVLQGQEFSTLRGNFAESNESDTAEKSVVWPPAAVDDEKIDVSTSRRYGSESWMSMGRNEPTYSDLLSGFGASGDPSQSSVMDQRSPVAYPARKQSLDHEGKLHMPHPWPVMPSSLSLHILDSNSKGPAHGGDTTYQARGNLRYSAFGEYPALHGHKVEHSHGNLMPPPPAPLTQYHSPCSREPMSQPVSAKTCEAVKPKDGDCKLFGFSLISGPIVPEPSLSQRNVSEPAGQMHLTPHQQRTSENDEKSDHSKGSRPADDPVDDHDKPLQTSQMHTKDVQSKPLGGSARSCTKVHKKGIALGRSVDLTKYSGYDELVTELDQLFEFGGELLSTKKDWLIVYTDNEGDMMLVGDDPWQEFCAMVRKIYIYPKEEIQKMSPGTLSSKNEENQPVTASEGADAKDVKCQPHQKFNSENGLDA 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01830 840 MobiDBLite consensus disorder prediction 114 133 - -
Pumo10g01830 840 SMART B3_2 139 241 IPR003340 GO:0003677
Pumo10g01830 840 MobiDBLite consensus disorder prediction 799 814 - -
Pumo10g01830 840 Pfam AUX/IAA family 698 797 IPR033389 -
Pumo10g01830 840 Gene3D - 707 799 - -
Pumo10g01830 840 MobiDBLite consensus disorder prediction 694 708 - -
Pumo10g01830 840 MobiDBLite consensus disorder prediction 661 693 - -
Pumo10g01830 840 Gene3D - 302 372 - -
Pumo10g01830 840 FunFam Auxin response factor 137 241 - -
Pumo10g01830 840 FunFam Auxin response factor 706 799 - -
Pumo10g01830 840 MobiDBLite consensus disorder prediction 652 711 - -
Pumo10g01830 840 SUPERFAMILY CAD & PB1 domains 712 787 - -
Pumo10g01830 840 Pfam Auxin response factor 265 347 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pumo10g01830 840 Gene3D - 136 241 IPR015300 -
Pumo10g01830 840 ProSiteProfiles B3 DNA-binding domain profile. 139 241 IPR003340 GO:0003677
Pumo10g01830 840 MobiDBLite consensus disorder prediction 373 421 - -
Pumo10g01830 840 ProSiteProfiles PB1 domain profile. 710 792 IPR000270 GO:0005515
Pumo10g01830 840 MobiDBLite consensus disorder prediction 799 840 - -
Pumo10g01830 840 FunFam Auxin response factor 302 374 - -
Pumo10g01830 840 SUPERFAMILY DNA-binding pseudobarrel domain 137 268 IPR015300 -
Pumo10g01830 840 Pfam B3 DNA binding domain 139 240 IPR003340 GO:0003677
Pumo10g01830 840 CDD B3_DNA 138 239 IPR003340 GO:0003677
Pumo10g01830 840 MobiDBLite consensus disorder prediction 391 413 - -
Pumo10g01830 840 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 32 799 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01830 Pumo-Chr10 24097298 24102176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01830 1 825 B3 DNA Binding Superfamily AT5G62000 64.740 0.0 1073
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pumo10g01830 B3 1.5e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01830 - - gmx:100803498 1603.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01830 10 24097298 24102176 Pumo10g01830 10 24097298 24102176 ECH
Pumo6g00569 6 7166413 7171331 Pumo10g01830 10 24097298 24102176 PCT
Pumo10g01830 10 24097298 24102176 Pumo4g01545 4 19342082 19345938 PCT