Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01827 ATGGAAGAGAGTTCAGAATCGTTACGCTCGAGATGTTTCAAGTTCTACAAAGGATGTCGAAAGTACACGGAAGAGCTTGGAGAGGCATATGATGGAGAGATTGCATTTGCAAGTGCCCTTGAAAATTTTGGAGGAGGGCATAATGATCCTCTGTTTGTAACATTGGGAGGACCTGTCATGACCAAATTTACTATTGCTTTGAGAGAAATCAGTACATACAAGGAACTTCTTCGGTCACAGGTGGAGCACATGCTGAATGACCGGTTACTAAACATGCTAAACGTGGATATCCTAGATGTCAAGGAAGCTAGGAGGCGTTTTGAGAAAGCTTCCCTTGTACTTGATCAGGCACGTGAGAAGTTTATGTCATTGAGAAAAAGCACTAGGATGGATATTGCCACTGTCGTAGAAGAGGAATTGCACAATGCAAGAACCTCATTTGAGGAAGCTCGTTTCAATCTGGTTAGTGCTCTTCACAATGTTGAGGCCAAGAAGAGATTTGAGTTTTTGGAGGCTGTCACTGGAGTTATGGATGCTCATCTTCGGTATTATAAACAGGGATATCAGCTACTACATGAGCTGGAGCCTTTCATTATCGAGGTTTTGGCATATACACAAAAGGCAAGAGAAAGTTACAATGAGGAGCAAATTAGTCTTTGTGAAAGAATGCTGGAGTACAAAAAACATGTTCATCATGAAAGTATGTTGTCCTTGAATGGCCCTTATGGCTCTCCCTGTAGAGATGGTCAAGTGCAGCCTTTTTCTAGGATATCAAATAAAGTGGCAGATGCTGTAACTGAATCTGCTGAAAATGGAAAGGTTCAAATCATTCGGCAAGGATATCTTTCTAAACGATCCTCAAATTTGAGGGGTGATTGGAAGAGAAGGTATTTTGTTCTTGATAGTCGTGGAATGCTTTACTACTTTCGGAAACCATGGAATGGATTACATGGTAGCAATCAATCATCCATGCACAGAAATTGTGCCACTGATAATAGTGCTGGAATTTTGAGTCGCCTGCTTTCTGCACATTACCATGGACCTGTCCCTGATGAAAAATCTGTAGCACGTCATACAGTGAACCTGCTCACATCAACAATCAAGATTGATGCTGAACAGTCAGATTTAAGGTTCTGCTTTAGGATTATTTCACCATCAAAGAGTTATACATTGCAGGCAGAAAATGCCCTGGACCAGATGGATTGGATGGAAAAGATAACTGGTGTAATTGCCTCCTTATTGAGTGCACAAACACTGTCAGATGACTCAGAAAGCGGTGACTATTACTCTGGCAGCAAGATTTATTTGTTAAAAGGTTCTCCAGATGATGATCATGCAGTGAGTGGGGATTCTATAAAAAATGAAAAGCCAATTGATGTTCTTAGAAAGGTTAGCGGGAATGACAAATGTGCTGATTGTGGTAAACCTGATCCAGACTGGGCATCCTTAAACCTTGGCATCCTTATATGCATTGAATGTTCCGGTGTTCACCGTAATCTTGGCGTACATATATCAAAAGTAAGATCACTGACGCTTGATGTAAAAGTATGGGATTCTGCTGTCTTAACCATGTTTCAGTCACTGGGGAATCTCTTTGCAAACTCAGTTTGGGAGGAACTGTTGCATTCAACAACTACTTCGCAAACTGATGATACTCCTGATGGTTCATCCAAGACACACAAAAAGTTATTTCATGCTAGAAAACCAGCACATGATGATCCTATTTCACTAAAAGAGAGGTTCATTCATGCAAAGTATGCTGCAAAAGTCTTTGTTCGCCGGATAACGAATAACAACCGTCTCCTTTCAACGGCACAACAGGTGGCAGAAAGCATCAGTGCCAATGACAAGAAAGCAGTGTACAGACACATTGTGAAGTCAGATGTGAATCTCAATGCTATTAGTGGGGAAGAAGGCTTTTCTTCCAACATCCCTTCTTCAATTAATCCAAACATATCATGTGAGAGTAAAACTCAACTAGTGGAGGACATACATGATGGTTCTAGTGTGCTTCACCTGGCATGCCTAACTAGTGATGCTGCAATGGTAGAGCTGCTCCTACAGTATGGGGCAGACGTAAATGCTATTGATTCTAGAGGGAGGACACCACTACATTATTGCACCATGAGAGGGGAGAATGCAGCTGCAAAAGTGCTTATTACAAGGGGGGCGAATCCACTTGCCGTAGACAAAGAAGGCAACACTCCTTTTAAGCTTGCACCAGAACCTGACACTATTGGCAAAGATACTCTTGCTCACAACCAGAAAATGACATGCCCTCAAAACTTAGTAGAAAAATGA 2301 0.4163 MEESSESLRSRCFKFYKGCRKYTEELGEAYDGEIAFASALENFGGGHNDPLFVTLGGPVMTKFTIALREISTYKELLRSQVEHMLNDRLLNMLNVDILDVKEARRRFEKASLVLDQAREKFMSLRKSTRMDIATVVEEELHNARTSFEEARFNLVSALHNVEAKKRFEFLEAVTGVMDAHLRYYKQGYQLLHELEPFIIEVLAYTQKARESYNEEQISLCERMLEYKKHVHHESMLSLNGPYGSPCRDGQVQPFSRISNKVADAVTESAENGKVQIIRQGYLSKRSSNLRGDWKRRYFVLDSRGMLYYFRKPWNGLHGSNQSSMHRNCATDNSAGILSRLLSAHYHGPVPDEKSVARHTVNLLTSTIKIDAEQSDLRFCFRIISPSKSYTLQAENALDQMDWMEKITGVIASLLSAQTLSDDSESGDYYSGSKIYLLKGSPDDDHAVSGDSIKNEKPIDVLRKVSGNDKCADCGKPDPDWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDSAVLTMFQSLGNLFANSVWEELLHSTTTSQTDDTPDGSSKTHKKLFHARKPAHDDPISLKERFIHAKYAAKVFVRRITNNNRLLSTAQQVAESISANDKKAVYRHIVKSDVNLNAISGEEGFSSNIPSSINPNISCESKTQLVEDIHDGSSVLHLACLTSDAAMVELLLQYGADVNAIDSRGRTPLHYCTMRGENAAAKVLITRGANPLAVDKEGNTPFKLAPEPDTIGKDTLAHNQKMTCPQNLVEK 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01827 766 CDD ArfGap 458 586 - -
Pumo10g01827 766 ProSiteProfiles Ankyrin repeat region circular profile. 666 697 - -
Pumo10g01827 766 CDD BAR_SFC_plant 1 197 IPR035670 -
Pumo10g01827 766 Gene3D Arfaptin homology (AH) domain/BAR domain 1 232 IPR027267 -
Pumo10g01827 766 Gene3D Arf GTPase activating protein 441 599 IPR038508 -
Pumo10g01827 766 ProSiteProfiles Ankyrin repeat profile. 666 698 IPR002110 GO:0005515
Pumo10g01827 766 ProSiteProfiles BAR domain profile. 1 207 IPR004148 GO:0005515|GO:0005737
Pumo10g01827 766 SMART ANK_2a 666 695 IPR002110 GO:0005515
Pumo10g01827 766 SMART ANK_2a 699 728 IPR002110 GO:0005515
Pumo10g01827 766 SMART 5bar 1 200 IPR004148 GO:0005515|GO:0005737
Pumo10g01827 766 Pfam PH domain 277 410 IPR001849 -
Pumo10g01827 766 SMART arf_gap_3 455 599 IPR001164 GO:0005096
Pumo10g01827 766 ProSiteProfiles PH domain profile. 275 411 IPR001849 -
Pumo10g01827 766 SUPERFAMILY ArfGap/RecO-like zinc finger 454 594 IPR037278 -
Pumo10g01827 766 ProSiteProfiles ARF GTPase-activating proteins domain profile. 455 599 IPR001164 GO:0005096
Pumo10g01827 766 PANTHER CENTAURIN/ARF 1 745 IPR045258 GO:0005096
Pumo10g01827 766 Pfam BAR domain of APPL family 2 215 IPR004148 GO:0005515|GO:0005737
Pumo10g01827 766 SUPERFAMILY Ankyrin repeat 667 741 IPR036770 -
Pumo10g01827 766 MobiDBLite consensus disorder prediction 544 565 - -
Pumo10g01827 766 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 441 600 - -
Pumo10g01827 766 Coils Coil 100 120 - -
Pumo10g01827 766 Gene3D - 648 757 IPR036770 -
Pumo10g01827 766 ProSiteProfiles Ankyrin repeat region circular profile. 699 725 - -
Pumo10g01827 766 CDD PH_ACAP 278 415 - -
Pumo10g01827 766 PRINTS HIV Rev interacting protein signature 486 503 IPR001164 GO:0005096
Pumo10g01827 766 PRINTS HIV Rev interacting protein signature 509 530 IPR001164 GO:0005096
Pumo10g01827 766 PRINTS HIV Rev interacting protein signature 467 486 IPR001164 GO:0005096
Pumo10g01827 766 Pfam Ankyrin repeats (3 copies) 664 727 IPR002110 GO:0005515
Pumo10g01827 766 ProSiteProfiles Ankyrin repeat profile. 699 731 IPR002110 GO:0005515
Pumo10g01827 766 Gene3D - 267 427 IPR011993 -
Pumo10g01827 766 SUPERFAMILY BAR/IMD domain-like 2 298 IPR027267 -
Pumo10g01827 766 Pfam Putative GTPase activating protein for Arf 458 591 IPR001164 GO:0005096
Pumo10g01827 766 SUPERFAMILY PH domain-like 186 410 - -
Pumo10g01827 766 SMART PH_update 276 413 IPR001849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01827 Pumo-Chr10 24048537 24056286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01827 465 597 C2H2 Transcription Factor Family AT4G21160 43.066 3.50e-23 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01827 K12489 - gmx:100797073 1392.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01827 10 24048537 24056286 Pumo10g01827 10 24048537 24056286 ECH
Pumo6g00570 6 7207166 7219043 Pumo10g01827 10 24048537 24056286 PCT