Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01823 ATGTTAAGCTCAATACACAGGCTTGCATCCAATATAAAAAAGAGAGAGGGAAGGAGGTTCCTGTTGCGGCAAAAAGCGTGGGATCTCTTGTTTCTGAAATTCCTATGCTGTGGAGCGTTTGAGAGATTCGTTTTTTTTTGTCTCTTTCTCTTTGTTCTCGAGTTTCTGGATGAGGAGCGTGCTGAATTTTGTGGAGGAGAAGCTTTTGGAGTTTTTGTGCTAGCCAGGGTTAAATGGTTTTTCTCTTTGGTGGCAGTGGTTTTTATGAGTTTATGGATGCCTTCTGAAATAATGGAGAAGAGGGGTGTTTCTGCCTATGCTTCTGAGAAGAATATTGGATTACGGAAGCCAAAATCTATTCATGACCATTTTCTACAAGGGAAGAGTGAAATGGCTGCATCACCTGGCAGCATTTTTAATACTTCGTCACCCCTTGAAACAAATGCAAAAACAGGCTTGTCAATGTCTCAGACTACTCTATCTCGGGAAATTACAGAAGACCTACATTTTGGCAGAGAAGCGGGCAATATAGAGATGCTGAAGGATTCCACCACAGAATCATTGAATTATCACAAGAGATCATGGTCTAATGTGCATAGGCAGCCAGCATCTAGCTCATATGGTCTAATTGGGAGCAAGATTGTCACCAATGCTGCCTCACGTGAAAGTAGTCTATTTTCAAGCTCATTATCTGAGATGTTTAGCCAAAAGTTGAGGTTAATGGGGAGTGGAGTGCTGTCTGATCAATCCATTACTGTTGGTTCCCTTCCTGAGGAAGAACCGTATAAATCTCTTGAAGAAATTGAGGCTGAAACTATTGGAAATCTCCTTCCTGATGAAGATGACCTGTTTTCTGGAGTCACTGATGAGTTAGGATGCAGTACTCGCTCTAGAATGAATGATGATTTTGAAGATTTTGATTTGTTCAGCAGCAGTGGAGGCATGGAATTGGAAGGAGATGAACATCTAATTTCCGGAAAAAGAACCAGTTGCGGGGATGAAGATCCTGATTACTTTGGAGTTTCTAAAGGAAAAATTCCTTTTGGTGAACAATCTTCCAGAACACTTTTTGTTAGAAACATCAATAGCAATGTAGAAGACTCTGAGCTAAAGGCTCTCTTTGAGCAATATGGAGATATCCGAACCATATATACTGCCTGCAAGCATCGTGGATTTGTTATGATTTCTTATTATGATCTAAGGGCAGCACAAAATGCAATGAAAGCACTTCAAAATAGGTCATTGAGATCTAGGAAACTTGATATACATTATTCAATTCCAAAGGGCAATGCTCCGGAGAAGGATATTGGCCATGGTACACTGATGATATCTGATCTTGATTCATCTGTTTTGAATGATGAACTAAAACAGATTTTTGGGTTTTATGGAGAAATTAGAGAAATCTATGAATATCCACGATTGAATCATGTCAAATTTATCGAATTTTATGATGTCCGGGCTGCAGAAGCTTCTCTTCGTGCATTGAACGGGATCTGCTTTGCTGGGAAGCACATTAAGCTTGAACCTGGTCTTCCCAAGATTGCAACATGTATGATGCAGCAGTCTCAGAAGGGACAAGATGAACCTGATCTTGGTCATAGTCTGAGTGACAACATATCCTTAAGACATAAGGCAGGAGTGTCATCTGGATTTACTGCATCTGGTGGTGGCTTGGAAAATGGATATAATCAGGGATTTCATTCTGCAACACAGCTACCTGCTTTTATTGATAACTCACTGTTTCATGTGAATTCTAGCATTCACAAGACCACAAGAGGGGCATCTGCTGGAAAAGTATCTGGTGTTTTTGAGGCCAGTAATGCTATTGATGCAATGAAATTTGCATCCATTTCGAGGTTCCATCCTCATTCTTTACCTGAATATCGCGAAAGTTTAGCTAATGGCAGTCCTTACAACTTTTCAAGTACCATTAACATGGCTGCCAATATTGGAACTGGATCAACGGAATCATCTGACAGCAGACACATTCAGGGAATGAGCTCAACTGGGAACCTAGCAGAGTTTAATGCAGGAGGAAATGGAAACCGCCCCCATCATGGACTTTATCATATGTGGAATGGGTCCAACTTGCATCAGCAACCTCCTTCAAGTGCCATGCTTTGGCAGAAAACCCCATCCTTTGTTAATGGTGCTTGTTCTCCAGGTCTTCCACAGATACCCAGCTTTCCTAGAACACCGCCTCATGTGCTTAGAGCATCACATATAGACCATCAAGTGGGATCAGCACCAGTTGTTACAGCCTCGCCCTGGGAAAGACAACATTCTTACTTGGGAGAGTCACCTGATGCTTCTGGTTTTAGATTGGGTTCTGTAGGAAGTCCAGGCTTTCATGGTAGCTGGCAGTTGCATCCTTCTGCTTCTAACAATATATTTTCTCATGTTGGTGGGAATGGTACAGAATTGACATCAAATGCTGGGCAGGGCTCTCCTAAGCAGTTGTCACATGTTTTCCCCGGGAGACTTCCCATGACTTTGGTTTCTAAATTTGATTCTACCAATGAACGAATGAGAAACCTCTATCCTCGTAGAAGTGAACCAAACACTAACAACAATGCTGATAAAAAACAATATGAACTTGACCTAGGCCGCATATTGCGTGGGGATGACAACCGAACAACGCTCATGATAAAAAATATTCCCAATAAGTATGCCAATTATCTCCATATCTTTTTGTACATTTTTGCTGCTTATGCTGTTATCTTTTCATCCTTAGTTTACCAAAGAATGTGA 2751 0.4122 MLSSIHRLASNIKKREGRRFLLRQKAWDLLFLKFLCCGAFERFVFFCLFLFVLEFLDEERAEFCGGEAFGVFVLARVKWFFSLVAVVFMSLWMPSEIMEKRGVSAYASEKNIGLRKPKSIHDHFLQGKSEMAASPGSIFNTSSPLETNAKTGLSMSQTTLSREITEDLHFGREAGNIEMLKDSTTESLNYHKRSWSNVHRQPASSSYGLIGSKIVTNAASRESSLFSSSLSEMFSQKLRLMGSGVLSDQSITVGSLPEEEPYKSLEEIEAETIGNLLPDEDDLFSGVTDELGCSTRSRMNDDFEDFDLFSSSGGMELEGDEHLISGKRTSCGDEDPDYFGVSKGKIPFGEQSSRTLFVRNINSNVEDSELKALFEQYGDIRTIYTACKHRGFVMISYYDLRAAQNAMKALQNRSLRSRKLDIHYSIPKGNAPEKDIGHGTLMISDLDSSVLNDELKQIFGFYGEIREIYEYPRLNHVKFIEFYDVRAAEASLRALNGICFAGKHIKLEPGLPKIATCMMQQSQKGQDEPDLGHSLSDNISLRHKAGVSSGFTASGGGLENGYNQGFHSATQLPAFIDNSLFHVNSSIHKTTRGASAGKVSGVFEASNAIDAMKFASISRFHPHSLPEYRESLANGSPYNFSSTINMAANIGTGSTESSDSRHIQGMSSTGNLAEFNAGGNGNRPHHGLYHMWNGSNLHQQPPSSAMLWQKTPSFVNGACSPGLPQIPSFPRTPPHVLRASHIDHQVGSAPVVTASPWERQHSYLGESPDASGFRLGSVGSPGFHGSWQLHPSASNNIFSHVGGNGTELTSNAGQGSPKQLSHVFPGRLPMTLVSKFDSTNERMRNLYPRRSEPNTNNNADKKQYELDLGRILRGDDNRTTLMIKNIPNKYANYLHIFLYIFAAYAVIFSSLVYQRM 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01823 916 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 356 420 IPR000504 GO:0003723
Pumo10g01823 916 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 441 506 IPR000504 GO:0003723
Pumo10g01823 916 FunFam Protein MEI2-like 1 438 532 - -
Pumo10g01823 916 SMART rrm1_1 355 423 IPR000504 GO:0003723
Pumo10g01823 916 SMART rrm1_1 440 508 IPR000504 GO:0003723
Pumo10g01823 916 FunFam MEI2-like protein 5 isoform 2 343 437 - -
Pumo10g01823 916 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 439 512 IPR000504 GO:0003723
Pumo10g01823 916 Gene3D - 437 533 IPR012677 -
Pumo10g01823 916 Gene3D - 348 436 IPR012677 -
Pumo10g01823 916 CDD RRM1_MEI2_like 353 428 IPR034453 -
Pumo10g01823 916 SUPERFAMILY RNA-binding domain, RBD 351 511 IPR035979 GO:0003676
Pumo10g01823 916 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 354 427 IPR000504 GO:0003723
Pumo10g01823 916 PANTHER RNA RECOGNITION MOTIF-CONTAINING 196 889 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01823 Pumo-Chr10 23956238 23963347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01823 349 505 Eukaryotic Initiation Factors Gene Family AT3G16380 26.404 6.01e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01823 - - gmx:100797616 1499.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01823 10 23956238 23963347 Pumo10g01823 10 23956238 23963347 ECH
Pumo6g00575 6 7302321 7308637 Pumo10g01823 10 23956238 23963347 PCT