Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01816 ATGGAGGGAAGATCACAAGGAGAAGAGGAATATGATTTGTTCCCAATATATTCCGAAAGGTCCCAGCAAGACATGTCAGCCATGGTTTCTGCTCTCACACAAGTCATTGGTGGCTCCAATAATGATTCTCTTCAGCTGCATGAAGAAGGCCTTTTAACTTCCTCACACAACAACACCTCAACCCAGAATAATAATGAACAATCCCATGTACCACAACAAGAACAAGGGGGTGTAAGAAGAAGACACTATAGAGGAGTGAGGCAGCGTCCATGGGGAAAGTGGGCTGCAGAGATTCGTGATCCGAAGAAGGCATCGAGGGTATGGCTTGGAACTTTCGAAACCGCTGAAGCTGCAGCTCTTGCTTATGATGAAGCTGCTCTCAGATTCAAAGGAAGTAAAGCAAAGCTCAATTTCCCCGAAAGGGTTCAAGGCACGGGCGAGTTTGGTAATTACCTCACAAATCAACACGTGTCATCAAGCAGCACTAGTAGCGAGCAAGCTTCTAACCCAGTTGCTCCACACTTCACTCAAGAAACTTATTCACCAAGTAACTTTCAATATGCACAACAACAACTTATGGGTGGTGGAAGCAGCAACTACAGTAATCAAGATATGCATCGTTTCTATGGGGGAGATCACATGTTTGTTTCTTCTCAGCCATCTGCATCATCAACGTCTTCTTCGAGTGGAGTACTGTCTCGGCAGCAGCAAGAAGAGTTGCTGAGATTTTCGATGCAGTTTGGAGGTTCTTCTACTTCTGACTATTCTGGGAATTGGAGGGGTGGACATTGA 792 0.4533 MEGRSQGEEEYDLFPIYSERSQQDMSAMVSALTQVIGGSNNDSLQLHEEGLLTSSHNNTSTQNNNEQSHVPQQEQGGVRRRHYRGVRQRPWGKWAAEIRDPKKASRVWLGTFETAEAAALAYDEAALRFKGSKAKLNFPERVQGTGEFGNYLTNQHVSSSSTSSEQASNPVAPHFTQETYSPSNFQYAQQQLMGGGSSNYSNQDMHRFYGGDHMFVSSQPSASSTSSSSGVLSRQQQEELLRFSMQFGGSSTSDYSGNWRGGH 263
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01816 263 MobiDBLite consensus disorder prediction 216 263 - -
Pumo10g01816 263 Pfam AP2 domain 82 131 IPR001471 GO:0003700|GO:0006355
Pumo10g01816 263 CDD AP2 82 140 IPR001471 GO:0003700|GO:0006355
Pumo10g01816 263 SMART rav1_2 82 145 IPR001471 GO:0003700|GO:0006355
Pumo10g01816 263 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Pumo10g01816 263 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Pumo10g01816 263 FunFam Ethylene-responsive transcription factor 2 77 140 - -
Pumo10g01816 263 Gene3D AP2/ERF domain 81 141 IPR036955 GO:0003700|GO:0006355
Pumo10g01816 263 MobiDBLite consensus disorder prediction 211 263 - -
Pumo10g01816 263 PANTHER DNA-BINDING DOMAIN 48 207 IPR044808 GO:0003700|GO:0009873
Pumo10g01816 263 ProSiteProfiles AP2/ERF domain profile. 82 139 IPR001471 GO:0003700|GO:0006355
Pumo10g01816 263 MobiDBLite consensus disorder prediction 153 178 - -
Pumo10g01816 263 MobiDBLite consensus disorder prediction 54 84 - -
Pumo10g01816 263 MobiDBLite consensus disorder prediction 54 74 - -
Pumo10g01816 263 SUPERFAMILY DNA-binding domain 82 140 IPR016177 GO:0003677
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pumo10g01816 Pumo-Chr10 23872349 23874904 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01816 12 155 AP2-EREBP Transcription Factor Family AT5G61890 63.514 1.83e-57 182
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo10g01816 AP2 3.4e-14 CL0081
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01816 - - gmx:100799190 362.459
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01816 10 23872349 23874904 Pumo10g01816 10 23872349 23874904 ECH
Pumo5g02108 5 57582173 57583853 Pumo10g01816 10 23872349 23874904 ECH
Pumo6g00578 6 7338894 7343231 Pumo10g01816 10 23872349 23874904 ECH
Pumo10g01816 10 23872349 23874904 Pumo5g02108 5 57582173 57583853 ECH
Pumo6g00578 6 7338894 7343231 Pumo10g01816 10 23872349 23874904 PCT