Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01815 ATGGATCCGGACGCATTCACCGCGAGCCTATTCAAGTGGGACCCACGCACCGTCCTCCCCCCCGCCGCGGCAGCGCCCCCGCGCCCCCAGCCTCTCCTCGACTACGCGGTGGCTCCCGCGGCGGTGGCAGCCCCGGCCTACCACCCGGCGAGGGCGGCGGCGGCGCCGCCGCGCGAGCTCGGCGGGCTGGAGGAGCTCTTCCAGGCCTACGGCATCCGGTACTACACGGCGGCGAAGATCGCGGAGCTCGGGTTCACGGTGAGCACGCTGGTGGACATGAAGGACGAGGAGCTCGACGACATGATGAACAGCCTCTCCCAGATTTTCCGCTGGGACCTCCTCGTCGGCGAGCGCTACGGCATCAAAGCCGCCGTCAGAGCGGAACGACGCCGCGTCGACGACGACGACATCAAGCGCCGCAATAACAACAACGGCAACAACAACCTCCTCTCCACCGACACCACCACCAACGCCCTCGATGCCCTCTCTCAAGAAGGTTTGTCGGAGGAGCCGGTGGTGCAACGAGAGAAGGAGGCTGTGGGGAGCGGGGGAGGGAGCACGTGGGAGGTGGCGGCGGCGGCGGCGGAGGAGAGGAGGAAGCAGCAGAGGAGGCGGAGGACGAGGATGAAGGCGAATCTTCATCACGACGAGAATGAGGATCATGAGGATGATGAAGGAGAAGAGAACGATGAAGGGAACAATAACAGTGGTGGTGGTGGTGGTTGTGAGAGGCAACGAGAGCACCCGTTCATCGTGACAGAGCCTGGGGAAGTTGCACGTGGGAAGAAGAACGGCTTGGACTATCTGTTTCACCTCTACGAGCAATGCCGTGAGTTCTTGATGCAGGTTCAGGCCATTGCCAAGGACCGCGGTGAAAAATGCCCCACCAAGGTGACAAATCAGGTGTTTAGGTACGCGAAGAAGGCTGGGGCAAGCTACATCAACAAGCCAAAGATGCGACACTACGTCCACTGCTACGCCTTACACTGTCTCGACGAGGAGGTGTCGAACGAGCTTCGAAGGGCGTTCAAGGAAAGAGGAGAGAACGTTGGGGCGTGGAGGCAAGCATGTTACAAGCCCCTTGTGGCCATCGCAGCGCGTCAAGGTTGGGACATCGATGCCATATTCAACGCGCATCCTCGTCTTTCCATTTGGTATGTTCCAACGAAGCTTCGTCAGCTTTGTCACGCTGAGAGAAACAGCGCCGCGGCTTCAAGCTCCGTCTCTGCTGGCAGTGCTCACCTTCCCTTCTAA 1254 0.6085 MDPDAFTASLFKWDPRTVLPPAAAAPPRPQPLLDYAVAPAAVAAPAYHPARAAAAPPRELGGLEELFQAYGIRYYTAAKIAELGFTVSTLVDMKDEELDDMMNSLSQIFRWDLLVGERYGIKAAVRAERRRVDDDDIKRRNNNNGNNNLLSTDTTTNALDALSQEGLSEEPVVQREKEAVGSGGGSTWEVAAAAAEERRKQQRRRRTRMKANLHHDENEDHEDDEGEENDEGNNNSGGGGGCERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLMQVQAIAKDRGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEVSNELRRAFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPRLSIWYVPTKLRQLCHAERNSAAASSSVSAGSAHLPF 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01815 417 PANTHER PROTEIN LEAFY 1 416 IPR002910 GO:0003677|GO:0006355
Pumo10g01815 417 Gene3D Protein LEAFY 240 409 IPR038276 -
Pumo10g01815 417 Pfam Floricaula / Leafy protein SAM domain 59 135 IPR035079 -
Pumo10g01815 417 Coils Coil 192 212 - -
Pumo10g01815 417 MobiDBLite consensus disorder prediction 165 245 - -
Pumo10g01815 417 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 237 403 IPR035209 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01815 1 411 Orphan Transcription Factor Family AT5G61850 63.121 6.24e-163 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LFY Pumo10g01815 C_LFY_FLO 6.5e-110 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01815 - - gmx:100798196 608.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01815 10 23829932 23832421 Pumo10g01815 10 23829932 23832421 ECH